Mercurial > repos > iuc > newick_utils
changeset 1:b4163d2f64ab draft default tip
"planemo upload for repository https://github.com/tjunier/newick_utils commit 352b2b1efa8400e145f02adb34e36c4af4524e54"
| author | iuc |
|---|---|
| date | Sun, 01 Dec 2019 17:33:02 -0500 |
| parents | fe4235285ee8 |
| children | |
| files | newick_display.xml |
| diffstat | 1 files changed, 9 insertions(+), 10 deletions(-) [+] |
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--- a/newick_display.xml Mon Oct 01 09:46:08 2018 -0400 +++ b/newick_display.xml Sun Dec 01 17:33:02 2019 -0500 @@ -1,10 +1,11 @@ -<tool id="newick_display" name="Newick Display" version="1.6"> +<tool id="newick_display" name="Newick Display" version="1.6+galaxy1"> <description>visualize a phylogenetic tree</description> <edam_operations> <edam_operation>operation_0567</edam_operation> </edam_operations> <requirements> <requirement type="package" version="1.6">newick_utils</requirement> + <requirement type="package" version="7.0.9_6">imagemagick</requirement> </requirements> <command detect_errors="aggressive"><![CDATA[ nw_display @@ -36,15 +37,13 @@ -w $width $radial - '$fileNewick' > output.svg + '$fileNewick' -#if $outformat == 'png': - && convert output.svg output.png - && mv output.png '$output' -#else: - && mv output.svg '$output' -#end if - + #if $outformat == 'png': + | convert - 'png:$output' + #else: + > '$output' + #end if ]]></command> <inputs> <param name="fileNewick" format="txt,newick,nw,nwk,nhx,mothur.tre" type="data" label="Newick file"/> @@ -112,7 +111,7 @@ <param name="outformat" value="png"/> <output name="output" file="tree.png" ftype="png" compare="sim_size" delta="15000"/> </test> - <test><!-- test with txt output format --> + <test><!-- test with txt output format --> <param name="fileNewick" value="tree.nwk"/> <param name="outformat" value="txt"/> <output name="output" file="tree.txt" ftype="txt"/>