Mercurial > repos > iuc > nextalign

annotate test-data/strict_qc.json @ 7:4771f8bc8fa4 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 809efd4036a8a0e129cb8bb84402e9904fc83727"
author iuc
date Tue, 30 Nov 2021 09:21:44 +0000
parents d82fc956ab4d
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
iuc
parents:
diff changeset
1 {
4
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
2 "schemaVersion": "1.2.0",
1
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
iuc
parents:
diff changeset
3 "privateMutations": {
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
iuc
parents:
diff changeset
4 "enabled": true,
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
iuc
parents:
diff changeset
5 "typical": 5,
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
iuc
parents:
diff changeset
6 "cutoff": 10
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
iuc
parents:
diff changeset
7 },
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
iuc
parents:
diff changeset
8 "missingData": {
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
iuc
parents:
diff changeset
9 "enabled": true,
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
iuc
parents:
diff changeset
10 "missingDataThreshold": 10,
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
iuc
parents:
diff changeset
11 "scoreBias": 300
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
iuc
parents:
diff changeset
12 },
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
iuc
parents:
diff changeset
13 "snpClusters": {
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
iuc
parents:
diff changeset
14 "enabled": true,
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
iuc
parents:
diff changeset
15 "windowSize": 100,
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
iuc
parents:
diff changeset
16 "clusterCutOff": 1,
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
iuc
parents:
diff changeset
17 "scoreWeight": 20
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
iuc
parents:
diff changeset
18 },
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
iuc
parents:
diff changeset
19 "mixedSites": {
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
iuc
parents:
diff changeset
20 "enabled": true,
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
iuc
parents:
diff changeset
21 "mixedSitesThreshold": 5
4
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
22 },
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
23 "frameShifts": {
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
24 "enabled": true,
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
25 "ignoredFrameShifts": [
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
26 { "geneName": "ORF3a", "codonRange": {"begin": 256, "end": 276} },
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
27 { "geneName": "ORF3a", "codonRange": {"begin": 258, "end": 276} },
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
28 { "geneName": "ORF7a", "codonRange": {"begin": 61, "end": 122} },
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
29 { "geneName": "ORF7a", "codonRange": {"begin": 62, "end": 122} },
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
30 { "geneName": "ORF7a", "codonRange": {"begin": 76, "end": 122} },
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
31 { "geneName": "ORF7a", "codonRange": {"begin": 101, "end": 122} },
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
32 { "geneName": "ORF7b", "codonRange": {"begin": 41, "end": 44} },
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
33 { "geneName": "ORF8", "codonRange": {"begin": 107, "end": 122} },
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
34 { "geneName": "ORF8", "codonRange": {"begin": 119, "end": 122} },
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
35 { "geneName": "ORF8", "codonRange": {"begin": 120, "end": 122} },
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
36 { "geneName": "ORF8", "codonRange": {"begin": 121, "end": 123} }
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
37 ]
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
38 },
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
39 "stopCodons": {
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
40 "enabled": true,
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
41 "ignoredStopCodons": [
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
42 {"geneName": "ORF7a", "codon": 61},
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
43 {"geneName": "ORF7a", "codon": 93},
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
44 {"geneName": "ORF7b", "codon": 32},
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
45 {"geneName": "ORF7b", "codon": 38},
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
46 {"geneName": "ORF8", "codon": 17},
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
47 {"geneName": "ORF8", "codon": 18},
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
48 {"geneName": "ORF8", "codon": 25},
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
49 {"geneName": "ORF8", "codon": 26},
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
50 {"geneName": "ORF8", "codon": 58},
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
51 {"geneName": "ORF8", "codon": 66},
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
52 {"geneName": "ORF8", "codon": 67},
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
53 {"geneName": "ORF8", "codon": 105}
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
iuc
parents: 1
diff changeset
54 ]
1
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
iuc
parents:
diff changeset
55 }
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
iuc
parents:
diff changeset
56 }