Mercurial > repos > iuc > nextalign
view test-data/genemap.gtf @ 11:9ad6e80ea21f draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit dd3394a10a05cf5d862222ef6a1e7edeaf150129"
| author | iuc |
|---|---|
| date | Fri, 04 Feb 2022 21:25:49 +0000 |
| parents | d1dd7d1b07f6 |
| children |
line wrap: on
line source
# Gene map (genome annotation) of SARS-CoV-2 in GTF format. # For gene map purpses we only need some of the columns. We substitute unused values with "." as per GTF spec. # See GTF format reference at https://www.ensembl.org/info/website/upload/gff.html # seqname source feature start end score strand frame attribute . . gene 26245 26472 . + . gene_name "E" . . gene 26523 27191 . + . gene_name "M" . . gene 28274 29533 . + . gene_name "N" . . gene 29558 29674 . + . gene_name "ORF10" . . gene 28734 28955 . + . gene_name "ORF14" . . gene 266 13468 . + . gene_name "ORF1a" . . gene 13468 21555 . + . gene_name "ORF1b" . . gene 25393 26220 . + . gene_name "ORF3a" . . gene 27202 27387 . + . gene_name "ORF6" . . gene 27394 27759 . + . gene_name "ORF7a" . . gene 27756 27887 . + . gene_name "ORF7b" . . gene 27894 28259 . + . gene_name "ORF8" . . gene 28284 28577 . + . gene_name "ORF9b" . . gene 21563 25384 . + . gene_name "S"