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annotate nextclade.loc.sample @ 18:feb40665d7cd draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit e72bef3964ce9d0c52ef2713d177684dfbee4cfb
author iuc
date Wed, 31 Aug 2022 16:40:29 +0000
parents 07ab9bd68a02
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07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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1 # this is a tab separated file describing the location of nextclade databases used for the
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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2 # nextclade viral lineage typing tool
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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3 #
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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4 # the columns are:
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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5 # value database_name description min_nextclade_version date path
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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6 #
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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7 # min_nextclade_version is the minimum pangolin tool major version that is needed to read the nextclade data
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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8 #
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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9 # the database_name refers to which dataset names that, in general, align with species names. for more details see the output of "nextclade dataset list"
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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10 #
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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11 # for example
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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12 #sars-cov-2_2022-06-14T12:00:00Z sars-cov-2 SARS-CoV-2 1.10.0 2022-06-14T12:00:00 /srv/galaxy/tool-data/nextclade/sars-cov-2_2022-06-14T12-00-00Z