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comparison macros.xml @ 17:07ab9bd68a02 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
author iuc
date Thu, 04 Aug 2022 06:58:48 +0000
parents 9e10ba792be2
children 128ba8da994f
comparison
equal deleted inserted replaced
16:9e10ba792be2 17:07ab9bd68a02
1 <macros> 1 <macros>
2 <!-- same version number is used for nextclade and nextalign releases, even though they are distinct tools --> 2 <!-- same version number is used for nextclade and nextalign releases, even though they are distinct tools -->
3 <token name="@TOOL_VERSION@">1.11.0</token> 3 <token name="@TOOL_VERSION@">2.4.0</token>
4 <xml name="citations"> 4 <xml name="citations">
5 <citations> 5 <citations>
6 <citation type="bibtex">@online{nextclade, 6 <citation type="bibtex">@online{nextclade,
7 title={nextclade}, 7 title={nextclade},
8 year = 2021, 8 year = 2021,
23 #else: 23 #else:
24 ln -f -s '$reference_source.ref_file.fields.path' reference.fa && 24 ln -f -s '$reference_source.ref_file.fields.path' reference.fa &&
25 #end if 25 #end if
26 ]]></token> 26 ]]></token>
27 27
28 <token name="@QUERY_FASTA@"><![CDATA[
29 #if $input_fasta.is_of_type('fasta.gz')
30 #set $query = 'query.fa.gz'
31 #else
32 #set $query = 'query.fa'
33 #end if
34 ln -s '$input_fasta' $query &&
35 ]]></token>
28 <!-- 36 <!--
29 inputs 37 inputs
30 --> 38 -->
31 39
32 <xml name="reference"> 40 <xml name="reference">