Mercurial > repos > iuc > nextclade

comparison nextclade.xml @ 8:56b1a13d9680 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 9e5f2fc04f61230208adf2e321ce84cb66e86006"
author iuc
date Wed, 13 Oct 2021 16:16:08 +0000
parents f6db3ce6ed1c
children 64be7ff9b97b
comparison
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7:f6db3ce6ed1c 8:56b1a13d9680
119 <param name="input_fasta" value="sarscov2_1.fasta" ftype="fasta" /> 119 <param name="input_fasta" value="sarscov2_1.fasta" ftype="fasta" />
120 <param name="outputs" value="report_tsv" /> 120 <param name="outputs" value="report_tsv" />
121 <param name="organism" value="sars-cov-2" /> 121 <param name="organism" value="sars-cov-2" />
122 <output name="report_tsv"> 122 <output name="report_tsv">
123 <assert_contents> 123 <assert_contents>
124 <has_n_columns n="52" /> 124 <has_n_columns n="53" />
125 <has_text text="20A" /> 125 <has_text text="20A" />
126 </assert_contents> 126 </assert_contents>
127 </output> 127 </output>
128 </test> 128 </test>
129 <test expect_num_outputs="3"> 129 <test expect_num_outputs="3">
130 <param name="input_fasta" value="sarscov2_1.fasta" ftype="fasta" /> 130 <param name="input_fasta" value="sarscov2_1.fasta" ftype="fasta" />
131 <param name="outputs" value="report_tsv,report_json,output_tree" /> 131 <param name="outputs" value="report_tsv,report_json,output_tree" />
132 <param name="organism" value="sars-cov-2" /> 132 <param name="organism" value="sars-cov-2" />
133 <output name="report_tsv"> 133 <output name="report_tsv">
134 <assert_contents> 134 <assert_contents>
135 <has_n_columns n="52" /> 135 <has_n_columns n="53" />
136 <has_text text="20A" /> 136 <has_text text="20A" />
137 </assert_contents> 137 </assert_contents>
138 </output> 138 </output>
139 <output name="report_json"> 139 <output name="report_json">
140 <assert_contents> 140 <assert_contents>
155 <param name="advanced_options" value="yes" /> 155 <param name="advanced_options" value="yes" />
156 <param name="input_qc_config" value="strict_qc.json" ftype="json" /> 156 <param name="input_qc_config" value="strict_qc.json" ftype="json" />
157 </conditional> 157 </conditional>
158 <output name="report_tsv"> 158 <output name="report_tsv">
159 <assert_contents> 159 <assert_contents>
160 <has_n_columns n="52" /> 160 <has_n_columns n="53" />
161 <has_text text="mediocre" /> 161 <has_text text="mediocre" />
162 </assert_contents> 162 </assert_contents>
163 </output> 163 </output>
164 </test> 164 </test>
165 </tests> 165 </tests>