Mercurial > repos > iuc > nextclade
comparison test-data/strict_qc.json @ 7:f6db3ce6ed1c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
author | iuc |
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date | Fri, 01 Oct 2021 07:47:24 +0000 |
parents | 615f484bdb4a |
children |
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6:1e0234b87809 | 7:f6db3ce6ed1c |
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1 { | 1 { |
2 "schemaVersion": "1.2.0", | |
2 "privateMutations": { | 3 "privateMutations": { |
3 "enabled": true, | 4 "enabled": true, |
4 "typical": 5, | 5 "typical": 5, |
5 "cutoff": 10 | 6 "cutoff": 10 |
6 }, | 7 }, |
16 "scoreWeight": 20 | 17 "scoreWeight": 20 |
17 }, | 18 }, |
18 "mixedSites": { | 19 "mixedSites": { |
19 "enabled": true, | 20 "enabled": true, |
20 "mixedSitesThreshold": 5 | 21 "mixedSitesThreshold": 5 |
22 }, | |
23 "frameShifts": { | |
24 "enabled": true, | |
25 "ignoredFrameShifts": [ | |
26 { "geneName": "ORF3a", "codonRange": {"begin": 256, "end": 276} }, | |
27 { "geneName": "ORF3a", "codonRange": {"begin": 258, "end": 276} }, | |
28 { "geneName": "ORF7a", "codonRange": {"begin": 61, "end": 122} }, | |
29 { "geneName": "ORF7a", "codonRange": {"begin": 62, "end": 122} }, | |
30 { "geneName": "ORF7a", "codonRange": {"begin": 76, "end": 122} }, | |
31 { "geneName": "ORF7a", "codonRange": {"begin": 101, "end": 122} }, | |
32 { "geneName": "ORF7b", "codonRange": {"begin": 41, "end": 44} }, | |
33 { "geneName": "ORF8", "codonRange": {"begin": 107, "end": 122} }, | |
34 { "geneName": "ORF8", "codonRange": {"begin": 119, "end": 122} }, | |
35 { "geneName": "ORF8", "codonRange": {"begin": 120, "end": 122} }, | |
36 { "geneName": "ORF8", "codonRange": {"begin": 121, "end": 123} } | |
37 ] | |
38 }, | |
39 "stopCodons": { | |
40 "enabled": true, | |
41 "ignoredStopCodons": [ | |
42 {"geneName": "ORF7a", "codon": 61}, | |
43 {"geneName": "ORF7a", "codon": 93}, | |
44 {"geneName": "ORF7b", "codon": 32}, | |
45 {"geneName": "ORF7b", "codon": 38}, | |
46 {"geneName": "ORF8", "codon": 17}, | |
47 {"geneName": "ORF8", "codon": 18}, | |
48 {"geneName": "ORF8", "codon": 25}, | |
49 {"geneName": "ORF8", "codon": 26}, | |
50 {"geneName": "ORF8", "codon": 58}, | |
51 {"geneName": "ORF8", "codon": 66}, | |
52 {"geneName": "ORF8", "codon": 67}, | |
53 {"geneName": "ORF8", "codon": 105} | |
54 ] | |
21 } | 55 } |
22 } | 56 } |