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view test-data/genemap.gtf @ 10:51f5e7505c4b draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 809efd4036a8a0e129cb8bb84402e9904fc83727"
author iuc
date Tue, 30 Nov 2021 09:22:07 +0000
parents 615f484bdb4a
children
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# Gene map (genome annotation) of SARS-CoV-2 in GTF format.
# For gene map purpses we only need some of the columns. We substitute unused values with "." as per GTF spec.
# See GTF format reference at https://www.ensembl.org/info/website/upload/gff.html
# seqname	source	feature	start	end	score	strand	frame	attribute
.	.	gene	26245	26472	.	+	.	 gene_name "E"
.	.	gene	26523	27191	.	+	.	 gene_name "M"
.	.	gene	28274	29533	.	+	.	 gene_name "N"
.	.	gene	29558	29674	.	+	.	 gene_name "ORF10"
.	.	gene	28734	28955	.	+	.	 gene_name "ORF14"
.	.	gene	266	13468	.	+	.	 gene_name "ORF1a"
.	.	gene	13468	21555	.	+	.	 gene_name "ORF1b"
.	.	gene	25393	26220	.	+	.	 gene_name "ORF3a"
.	.	gene	27202	27387	.	+	.	 gene_name "ORF6"
.	.	gene	27394	27759	.	+	.	 gene_name "ORF7a"
.	.	gene	27756	27887	.	+	.	 gene_name "ORF7b"
.	.	gene	27894	28259	.	+	.	 gene_name "ORF8"
.	.	gene	28284	28577	.	+	.	 gene_name "ORF9b"
.	.	gene	21563	25384	.	+	.	 gene_name "S"