Mercurial > repos > iuc > ngsutils_bam_filter

comparison bam_filter.xml @ 4:aecfe10118ed draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ngsutils commit 89a8c896bdc435acb5e5c490f4deae4a4ed9607a
author iuc
date Fri, 17 Nov 2017 05:17:42 -0500
parents 9b9ae5963d3c
children
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3:9b9ae5963d3c 4:aecfe10118ed
8 <expand macro="version" /> 8 <expand macro="version" />
9 <command><![CDATA[ 9 <command><![CDATA[
10 ## If the tool is executed with no filtering option, 10 ## If the tool is executed with no filtering option,
11 ## the default parameters simply copy over the input file 11 ## the default parameters simply copy over the input file
12 if grep -q "\w" '${parameters}'; then 12 if grep -q "\w" '${parameters}'; then
13 '$__tool_directory__/filter.py' 13 python '$__tool_directory__/filter.py'
14 '$infile' 14 '$infile'
15 '$outfile' 15 '$outfile'
16 `cat ${parameters}`; 16 `cat ${parameters}`;
17 else 17 else
18 cp '$infile' '$outfile'; 18 cp '$infile' '$outfile';