Mercurial > repos > iuc > ngsutils_bam_filter

diff ngsutils/support/bgzip.py @ 2:7a68005de299 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ngsutils commit 9a243c616a4a3156347e38fdb5f35863ae5133f9
author iuc
date Sun, 27 Nov 2016 15:01:21 -0500
parents 4e4e4093d65d
children
line wrap: on
line diff
--- a/ngsutils/support/bgzip.py	Sun Dec 06 05:03:12 2015 -0500
+++ b/ngsutils/support/bgzip.py	Sun Nov 27 15:01:21 2016 -0500
@@ -6,9 +6,9 @@
 will load the bgzip archive and output the block information.
 '''
 
-import sys
 import os
 import struct
+import sys
 
 
 class BGZip(object):
@@ -41,7 +41,7 @@
         if whence == 0:
             self.seek(0, 0)
 
-        ### read into chunk, if not enough data in chunk, read next chunk
+        # read into chunk, if not enough data in chunk, read next chunk
         ret = ''
         while amount and self.pos < self.fsize:
             if len(self.cdata) - self.cpos < amount:
@@ -133,5 +133,6 @@
         self.pos += size
         return struct.unpack(field_types, self.fileobj.read(size))
 
+
 if __name__ == '__main__':
     print BGZip(sys.argv[1]).dump()