Mercurial > repos > iuc > ngsutils_bam_filter

diff ngsutils/support/stats.py @ 2:7a68005de299 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ngsutils commit 9a243c616a4a3156347e38fdb5f35863ae5133f9
author: iuc
date: Sun, 27 Nov 2016 15:01:21 -0500
parents: 4e4e4093d65d
--- a/ngsutils/support/stats.py	Sun Dec 06 05:03:12 2015 -0500
+++ b/ngsutils/support/stats.py	Sun Nov 27 15:01:21 2016 -0500
@@ -2,8 +2,10 @@
 various statistical tests and methods...
 '''
 import math
+
 from ngsutils.support import memoize
 
+
 def median(vals):
     '''
     >>> median([1,2,3])
@@ -106,6 +108,7 @@
 
     return (mean, stdev)
 
+
 @memoize
 def poisson_prob(x, mean):
     '''
@@ -120,15 +123,16 @@
         0.33277427882095645
     '''
     acc = 0.0
-    for i in xrange(1, x+1):
+    for i in xrange(1, x + 1):
         acc += poisson_func(i, mean)
     return acc
 
+
 @memoize
 def poisson_func(mu, lambd):
     '''
         This is the Poisson distribution function
-        
+
         p(mu) = (lambda^mu * e^(-lambda)) / (mu!)
 
         mu is a count
@@ -156,6 +160,7 @@
     '''
     return math.factorial(x)
 
+
 if __name__ == '__main__':
     import doctest
     doctest.testmod()