Mercurial > repos > iuc > nonpareil
comparison README.rst @ 0:280386b252a5 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nonpareil commit dba1b944c94d0adbfa2e8ee8068ee5b80e4ca583
| author | iuc |
|---|---|
| date | Sun, 05 Nov 2017 11:40:13 -0500 |
| parents | |
| children | cef64c36c89e |
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| -1:000000000000 | 0:280386b252a5 |
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| 1 Nonpareil memory usage | |
| 2 ======================= | |
| 3 | |
| 4 By default, this tool is configured to limit the memory consumption to 1024 Mib. | |
| 5 | |
| 6 Ideally this value should be larger than the sequences to analyze (discarding non-sequence elements like headers or quality). This is particularly important when running in multiple cores. This value is approximated. Maximum value in this version: 4194303. | |
| 7 | |
| 8 You can set the NONPAREIL_MAX_MEMORY environmental variable in the destination section of the job_conf.xml file: | |
| 9 | |
| 10 ``` | |
| 11 <?xml version="1.0"?> | |
| 12 <!-- A sample job config that explicitly configures job running the way it is configured by default (if there is no explicit config). --> | |
| 13 <job_conf> | |
| 14 <plugins> | |
| 15 <plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" workers="4"/> | |
| 16 </plugins> | |
| 17 <handlers> | |
| 18 <handler id="main"/> | |
| 19 </handlers> | |
| 20 <destinations> | |
| 21 <destination id="local" runner="local"> | |
| 22 <env id="NONPAREIL_MAX_MEMORY">1024</env> | |
| 23 </destination> | |
| 24 </destinations> | |
| 25 </job_conf> | |
| 26 ``` | |
| 27 | |
| 28 | |
| 29 |