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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nonpareil commit 0b535bf15f4bb0110f599c1af9b1dc1c66302899
author iuc
date Tue, 12 Mar 2024 08:50:50 +0000
parents 280386b252a5
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1:45210df786b9 2:cef64c36c89e
1 Nonpareil memory usage 1 Nonpareil memory usage
2 ======================= 2 ======================
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4 By default, this tool is configured to limit the memory consumption to 1024 Mib. 4 By default, this tool is configured to limit the memory consumption to 1024 Mib.
5 5
6 Ideally this value should be larger than the sequences to analyze (discarding non-sequence elements like headers or quality). This is particularly important when running in multiple cores. This value is approximated. Maximum value in this version: 4194303. 6 Ideally, this value should be larger than the sequences to analyze (discarding non-sequence elements like headers or quality). This is particularly important when running in multiple cores.
7 7 This value is approximated. Maximum value in this version: 4194303.
8 You can set the NONPAREIL_MAX_MEMORY environmental variable in the destination section of the job_conf.xml file:
9
10 ```
11 <?xml version="1.0"?>
12 <!-- A sample job config that explicitly configures job running the way it is configured by default (if there is no explicit config). -->
13 <job_conf>
14 <plugins>
15 <plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" workers="4"/>
16 </plugins>
17 <handlers>
18 <handler id="main"/>
19 </handlers>
20 <destinations>
21 <destination id="local" runner="local">
22 <env id="NONPAREIL_MAX_MEMORY">1024</env>
23 </destination>
24 </destinations>
25 </job_conf>
26 ```
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