Mercurial > repos > iuc > obi_annotate

comparison obiannotate.xml @ 4:d50dc96e3ce9 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/obitools commit dabf62d438facc62f3e606ff4419092fdcdfaa44
author iuc
date Wed, 20 Mar 2024 13:16:14 +0000
parents f82cefbbcea5
children
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3:f82cefbbcea5 4:d50dc96e3ce9
1 <tool id="obi_annotate" name="obiannotate" version="@TOOL_VERSION@" profile="@PROFILE@"> 1 <tool id="obi_annotate" name="obiannotate" version="@TOOL_VERSION@" profile="@PROFILE@">
2 <description>Adds/Edits sequence record annotations</description> 2 <description>Adds/Edits sequence record annotations</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="bio_tools"/>
6 <expand macro="requirements"/> 7 <expand macro="requirements"/>
7 <expand macro="stdio"/> 8 <expand macro="stdio"/>
8 <command><![CDATA[ 9 <command><![CDATA[
9 @GUNZIP_INPUT@ 10 @GUNZIP_INPUT@
10 11
126 </inputs> 127 </inputs>
127 <outputs> 128 <outputs>
128 <data name="output" format="auto"/> 129 <data name="output" format="auto"/>
129 </outputs> 130 </outputs>
130 <tests> 131 <tests>
131 <test> 132 <test expect_num_outputs="1">
132 <param name="input" value="output_obiuniq.fasta" ftype="fasta"/> 133 <param name="input" value="output_obiuniq.fasta" ftype="fasta"/>
133 <section name="key_selector"> 134 <section name="key_selector">
134 <param name="key" value="count" /> 135 <param name="key" value="count"/>
135 <param name="key2" value="merged_sample" /> 136 <param name="key2" value="merged_sample"/>
136 </section> 137 </section>
137 <param name="uniqid" value="true" /> 138 <param name="uniqid" value="true"/>
138 <param name="clearbool" value="true" /> 139 <param name="clearbool" value="true"/>
139 <param name="length" value="true" /> 140 <param name="length" value="true"/>
140 <param name="seqrank" value="true" /> 141 <param name="seqrank" value="true"/>
141 142
142 <output name="output" file="output_obiannotate.fasta" ftype="fasta"/> 143 <output name="output" file="output_obiannotate.fasta" ftype="fasta"/>
143 </test> 144 </test>
144 <test> 145 <test expect_num_outputs="1">
145 <param name="input" value="output_obiuniq.fasta.gz" ftype="fasta.gz"/> 146 <param name="input" value="output_obiuniq.fasta.gz" ftype="fasta.gz"/>
146 <section name="key_selector"> 147 <section name="key_selector">
147 <param name="key" value="count" /> 148 <param name="key" value="count"/>
148 <param name="key2" value="merged_sample" /> 149 <param name="key2" value="merged_sample"/>
149 </section> 150 </section>
150 <param name="uniqid" value="true" /> 151 <param name="uniqid" value="true"/>
151 <param name="clearbool" value="true" /> 152 <param name="clearbool" value="true"/>
152 <param name="length" value="true" /> 153 <param name="length" value="true"/>
153 <param name="seqrank" value="true" /> 154 <param name="seqrank" value="true"/>
154 <output name="output" file="output_obiannotate.fasta.gz" ftype="fasta.gz" decompress="true"/> 155 <output name="output" file="output_obiannotate.fasta.gz" ftype="fasta.gz" decompress="true"/>
155 </test> 156 </test>
156 <!-- TODO fastq input test --> 157 <!-- TODO fastq input test -->
157 </tests> 158 </tests>
158 159