Mercurial > repos > iuc > obi_convert

comparison test-data/output_obiclean_simple.fasta @ 0:93f8e0553bcd draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/obitools commit e1031e4c94b25d1ed535bf221764ab801b710ab2
author iuc
date Wed, 12 Apr 2017 17:39:25 -0400
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:93f8e0553bcd
1 >HELIUM_000100422_612GNAAXX:7:119:14871:19157#0/2_CONS_SUB_SUB_CMP count=1; obiclean_count={'XXX': 1}; obiclean_head=True; obiclean_cluster={'XXX': 'HELIUM_000100422_612GNAAXX:7:119:14871:19157#0/2_CONS_SUB_SUB_CMP'}; seq_length=100; obiclean_internalcount=0; obiclean_status={'XXX': 's'}; seq_rank=1; merged_sample={'29a_F260619': 1}; obiclean_samplecount=1; obiclean_headcount=0; obiclean_singletoncount=1;
2 ttagccctaaacacaagtaattattataacaaaatcattcgccagagtactaccggcaat
3 agctcaaaactcaaaggacttggcggtgctttataccctt
4 >HELIUM_000100422_612GNAAXX:7:22:8540:14708#0/2_CONS_SUB_SUB count=61; obiclean_count={'XXX': 81}; obiclean_head=True; obiclean_cluster={'XXX': 'HELIUM_000100422_612GNAAXX:7:22:8540:14708#0/2_CONS_SUB_SUB'}; seq_length=100; obiclean_internalcount=0; obiclean_status={'XXX': 'h'}; seq_rank=4; merged_sample={'29a_F260619': 30, '15a_F730814': 31}; obiclean_samplecount=1; obiclean_headcount=1; obiclean_singletoncount=0;
5 ttagccctaaacacaagtaattaatataacaaaattattcgccagagtactaccggcaat
6 agcttaaaactcaaaggacttggcggtgctttataccctt
7 >HELIUM_000100422_612GNAAXX:7:57:18459:16145#0/2_CONS_SUB_SUB_CMP count=64; obiclean_count={'XXX': 77}; obiclean_head=True; obiclean_cluster={'XXX': 'HELIUM_000100422_612GNAAXX:7:57:18459:16145#0/2_CONS_SUB_SUB_CMP'}; seq_length=99; obiclean_internalcount=0; obiclean_status={'XXX': 'h'}; seq_rank=5; merged_sample={'26a_F040644': 64}; obiclean_samplecount=1; obiclean_headcount=1; obiclean_singletoncount=0;
8 ttagccctaaacataaacattcaataaacaagaatgttcgccagagtactactagcaaca
9 gcctgaaactcaaaggacttggcggtgctttacatccct
10 >HELIUM_000100422_612GNAAXX:7:89:10281:5930#0/2_CONS_SUB_SUB_CMP count=3; obiclean_count={'XXX': 3}; obiclean_head=True; obiclean_cluster={'XXX': 'HELIUM_000100422_612GNAAXX:7:89:10281:5930#0/2_CONS_SUB_SUB_CMP'}; seq_length=100; obiclean_internalcount=0; obiclean_status={'XXX': 's'}; seq_rank=6; merged_sample={'29a_F260619': 3}; obiclean_samplecount=1; obiclean_headcount=0; obiclean_singletoncount=1;
11 ttagccctaaacacaaataattacacaaacaaaattgttcaccagagtactagcggcaac
12 agcttaaaactcaaaggacttggcggtgctttataccctt
13 >HELIUM_000100422_612GNAAXX:7:6:9274:14951#0/2_CONS_SUB_SUB count=46; obiclean_count={'XXX': 52}; obiclean_head=True; obiclean_cluster={'XXX': 'HELIUM_000100422_612GNAAXX:7:6:9274:14951#0/2_CONS_SUB_SUB'}; seq_length=100; obiclean_internalcount=0; obiclean_status={'XXX': 'h'}; seq_rank=8; merged_sample={'13a_F730603': 46}; obiclean_samplecount=1; obiclean_headcount=1; obiclean_singletoncount=0;
14 ctagccttaaacacaaatagttatgcaaacaaaactattcgccagagtactaccggcaat
15 agcttaaaactcaaaggacttggcggtgctttataccctt
16 >HELIUM_000100422_612GNAAXX:7:13:6954:13039#0/2_CONS_SUB_SUB_CMP count=1; obiclean_count={'XXX': 1}; obiclean_head=True; obiclean_cluster={'XXX': 'HELIUM_000100422_612GNAAXX:7:13:6954:13039#0/2_CONS_SUB_SUB_CMP'}; seq_length=99; obiclean_internalcount=0; obiclean_status={'XXX': 's'}; seq_rank=11; merged_sample={'26a_F040644': 1}; obiclean_samplecount=1; obiclean_headcount=0; obiclean_singletoncount=1;
17 ttagccctaaacataaacattcaataaacaagaatgttcgccagaggactactagcaata
18 gcttaaaactcaaaggacttggcggtgctttatatccct
19 >HELIUM_000100422_612GNAAXX:7:38:6201:12003#0/2_CONS_SUB_SUB_CMP count=1; obiclean_count={'XXX': 1}; obiclean_head=True; obiclean_cluster={'XXX': 'HELIUM_000100422_612GNAAXX:7:38:6201:12003#0/2_CONS_SUB_SUB_CMP'}; seq_length=99; obiclean_internalcount=0; obiclean_status={'XXX': 's'}; seq_rank=12; merged_sample={'26a_F040644': 1}; obiclean_samplecount=1; obiclean_headcount=0; obiclean_singletoncount=1;
20 ttagccctaaacatagataattttacaacaaaataattcgccagaggactactagcaata
21 gcttaaaactcaaagaactgggcggtgctttatatcccg
22 >HELIUM_000100422_612GNAAXX:7:78:7151:19928#0/2_CONS_SUB_SUB count=1; obiclean_count={'XXX': 1}; obiclean_head=True; obiclean_cluster={'XXX': 'HELIUM_000100422_612GNAAXX:7:78:7151:19928#0/2_CONS_SUB_SUB'}; seq_length=99; obiclean_internalcount=0; obiclean_status={'XXX': 's'}; seq_rank=14; merged_sample={'26a_F040644': 1}; obiclean_samplecount=1; obiclean_headcount=0; obiclean_singletoncount=1;
23 ttagccctaaacataaacattcaataaacgagaatgttcgccagtgtacttctagcaaca
24 ggctgaaactcaaaggacttggcggtggtttacatccct
25 >HELIUM_000100422_612GNAAXX:7:13:5742:9859#0/2_CONS_SUB_SUB count=7; obiclean_count={'XXX': 7}; obiclean_head=True; obiclean_cluster={'XXX': 'HELIUM_000100422_612GNAAXX:7:13:5742:9859#0/2_CONS_SUB_SUB'}; seq_length=4; obiclean_internalcount=0; obiclean_status={'XXX': 's'}; seq_rank=16; merged_sample={'29a_F260619': 7}; obiclean_samplecount=1; obiclean_headcount=0; obiclean_singletoncount=1;
26 tttt
27 >HELIUM_000100422_612GNAAXX:7:114:4511:17596#0/2_CONS_SUB_SUB_CMP count=1; obiclean_count={'XXX': 1}; obiclean_head=True; obiclean_cluster={'XXX': 'HELIUM_000100422_612GNAAXX:7:114:4511:17596#0/2_CONS_SUB_SUB_CMP'}; seq_length=100; obiclean_internalcount=0; obiclean_status={'XXX': 's'}; seq_rank=19; merged_sample={'29a_F260619': 1}; obiclean_samplecount=1; obiclean_headcount=0; obiclean_singletoncount=1;
28 ttagccctaaacacaagtaattaatataacaaaattattcgccagagtgctaccggcaat
29 agcttaaaactcaaaggacttggcggtgctttatacgctt
30 >HELIUM_000100422_612GNAAXX:7:29:18416:16620#0/2_CONS_SUB_SUB_CMP count=1; obiclean_count={'XXX': 1}; obiclean_head=True; obiclean_cluster={'XXX': 'HELIUM_000100422_612GNAAXX:7:29:18416:16620#0/2_CONS_SUB_SUB_CMP'}; seq_length=100; obiclean_internalcount=0; obiclean_status={'XXX': 's'}; seq_rank=21; merged_sample={'29a_F260619': 1}; obiclean_samplecount=1; obiclean_headcount=0; obiclean_singletoncount=1;
31 ttagccctaaacacaagtaattattataacaaaattattcgccagagttctaccggcaat
32 agcttaaaactcaaaggacttggcggtgctttataccctg
33 >HELIUM_000100422_612GNAAXX:7:120:1900:13295#0/2_CONS_SUB_SUB_CMP count=1; obiclean_count={'XXX': 1}; obiclean_head=True; obiclean_cluster={'XXX': 'HELIUM_000100422_612GNAAXX:7:120:1900:13295#0/2_CONS_SUB_SUB_CMP'}; seq_length=100; obiclean_internalcount=0; obiclean_status={'XXX': 's'}; seq_rank=22; merged_sample={'15a_F730814': 1}; obiclean_samplecount=1; obiclean_headcount=0; obiclean_singletoncount=1;
34 ttagccctaaacacaagtaattaatataacaaaattattcgccagagtactacgcgcaat
35 agcttaaaactcaaaggacttggcggtgctttataccctt
36 >HELIUM_000100422_612GNAAXX:7:9:10358:4089#0/2_CONS_SUB_SUB_CMP count=1; obiclean_count={'XXX': 1}; obiclean_head=True; obiclean_cluster={'XXX': 'HELIUM_000100422_612GNAAXX:7:9:10358:4089#0/2_CONS_SUB_SUB_CMP'}; seq_length=100; obiclean_internalcount=0; obiclean_status={'XXX': 's'}; seq_rank=25; merged_sample={'13a_F730603': 1}; obiclean_samplecount=1; obiclean_headcount=0; obiclean_singletoncount=1;
37 ctagccttaaacacaaatagttatgcaaacaaaactattcgccagagtactacaggcaat
38 agctcaaaactcaaagaacttggcggtgctttataccctt
39 >HELIUM_000100422_612GNAAXX:7:95:1688:9598#0/2_CONS_SUB_SUB_CMP count=1; obiclean_count={'XXX': 1}; obiclean_head=True; obiclean_cluster={'XXX': 'HELIUM_000100422_612GNAAXX:7:95:1688:9598#0/2_CONS_SUB_SUB_CMP'}; seq_length=99; obiclean_internalcount=0; obiclean_status={'XXX': 's'}; seq_rank=30; merged_sample={'26a_F040644': 1}; obiclean_samplecount=1; obiclean_headcount=0; obiclean_singletoncount=1;
40 ttagccctaaacataaacattcaataaacaagaatgttcgccagagtgatactagcaaca
41 gcctgaaactcaaaggacttggcggtgctttacatccct
42 >HELIUM_000100422_612GNAAXX:7:55:16528:11418#0/2_CONS_SUB_SUB count=1; obiclean_count={'XXX': 1}; obiclean_head=True; obiclean_cluster={'XXX': 'HELIUM_000100422_612GNAAXX:7:55:16528:11418#0/2_CONS_SUB_SUB'}; seq_length=100; obiclean_internalcount=0; obiclean_status={'XXX': 's'}; seq_rank=31; merged_sample={'13a_F730603': 1}; obiclean_samplecount=1; obiclean_headcount=0; obiclean_singletoncount=1;
43 ctagccttaaacacaaatagttatgcaaacaaaactattcgccagagtactaccggcact
44 agcttacaactcaaaggacttggcggtgctttataccctt
45 >HELIUM_000100422_612GNAAXX:7:111:8478:1127#0/2_CONS_SUB_SUB_CMP count=1; obiclean_count={'XXX': 1}; obiclean_head=True; obiclean_cluster={'XXX': 'HELIUM_000100422_612GNAAXX:7:111:8478:1127#0/2_CONS_SUB_SUB_CMP'}; seq_length=99; obiclean_internalcount=0; obiclean_status={'XXX': 's'}; seq_rank=33; merged_sample={'26a_F040644': 1}; obiclean_samplecount=1; obiclean_headcount=0; obiclean_singletoncount=1;
46 ttagccctaaacataaacattcaataaacaagaatgttcgccagagtactactagcaaca
47 gcctggaacgcaaaggacttggcggtgctttacatccct
48 >HELIUM_000100422_612GNAAXX:7:81:15726:2345#0/2_CONS_SUB_SUB_CMP count=1; obiclean_count={'XXX': 1}; obiclean_head=True; obiclean_cluster={'XXX': 'HELIUM_000100422_612GNAAXX:7:81:15726:2345#0/2_CONS_SUB_SUB_CMP'}; seq_length=99; obiclean_internalcount=0; obiclean_status={'XXX': 's'}; seq_rank=34; merged_sample={'26a_F040644': 1}; obiclean_samplecount=1; obiclean_headcount=0; obiclean_singletoncount=1;
49 ttagccctaaacataaacattcaataaacaagaatgttcgccagagtactactagcaaca
50 gcctgaaactcaaagcactcggcggtgctttacatccct
51 >HELIUM_000100422_612GNAAXX:7:7:11110:17924#0/2_CONS_SUB_SUB count=1; obiclean_count={'XXX': 1}; obiclean_head=True; obiclean_cluster={'XXX': 'HELIUM_000100422_612GNAAXX:7:7:11110:17924#0/2_CONS_SUB_SUB'}; seq_length=100; obiclean_internalcount=0; obiclean_status={'XXX': 's'}; seq_rank=35; merged_sample={'15a_F730814': 1}; obiclean_samplecount=1; obiclean_headcount=0; obiclean_singletoncount=1;
52 ttagccctaaacacaagtaattaatataacaaaattattcgccagagtcataccggcaat
53 agcttaaaactcaaaggacttggcggtgctttataccctt
54 >HELIUM_000100422_612GNAAXX:7:115:3625:10051#0/2_CONS_SUB_SUB count=1; obiclean_count={'XXX': 1}; obiclean_head=True; obiclean_cluster={'XXX': 'HELIUM_000100422_612GNAAXX:7:115:3625:10051#0/2_CONS_SUB_SUB'}; seq_length=5; obiclean_internalcount=0; obiclean_status={'XXX': 's'}; seq_rank=38; merged_sample={'13a_F730603': 1}; obiclean_samplecount=1; obiclean_headcount=0; obiclean_singletoncount=1;
55 caata
56 >HELIUM_000100422_612GNAAXX:7:105:14135:6905#0/2_CONS_SUB_SUB count=1; obiclean_count={'XXX': 1}; obiclean_head=True; obiclean_cluster={'XXX': 'HELIUM_000100422_612GNAAXX:7:105:14135:6905#0/2_CONS_SUB_SUB'}; seq_length=100; obiclean_internalcount=0; obiclean_status={'XXX': 's'}; seq_rank=43; merged_sample={'29a_F260619': 1}; obiclean_samplecount=1; obiclean_headcount=0; obiclean_singletoncount=1;
57 ttagccctaaacacaagtaattaatataacaaaattattcaccagagtactagcggcaac
58 agcttaaaactcaaaggacttggcggtgctttataccctt
59 >HELIUM_000100422_612GNAAXX:7:7:15538:8325#0/2_CONS_SUB_SUB_CMP count=1; obiclean_count={'XXX': 1}; obiclean_head=True; obiclean_cluster={'XXX': 'HELIUM_000100422_612GNAAXX:7:7:15538:8325#0/2_CONS_SUB_SUB_CMP'}; seq_length=99; obiclean_internalcount=0; obiclean_status={'XXX': 's'}; seq_rank=49; merged_sample={'26a_F040644': 1}; obiclean_samplecount=1; obiclean_headcount=0; obiclean_singletoncount=1;
60 ttagccctaaacataaacattcaataaacaagaatgtcggccagagtactactagcaaca
61 gcatgaaactcaaagaactgggcggtgctttacatccct
62 >HELIUM_000100422_612GNAAXX:7:111:18277:17779#0/2_CONS_SUB_SUB_CMP count=1; obiclean_count={'XXX': 1}; obiclean_head=True; obiclean_cluster={'XXX': 'HELIUM_000100422_612GNAAXX:7:111:18277:17779#0/2_CONS_SUB_SUB_CMP'}; seq_length=99; obiclean_internalcount=0; obiclean_status={'XXX': 's'}; seq_rank=53; merged_sample={'26a_F040644': 1}; obiclean_samplecount=1; obiclean_headcount=0; obiclean_singletoncount=1;
63 ttagccctaaacatagataattttacaacaaaataattcgccagaggactactagcaata
64 gcctgaaactcaaaggacttggcggtgctttacatccct
65 >HELIUM_000100422_612GNAAXX:7:30:1800:7833#0/2_CONS_SUB_SUB count=1; obiclean_count={'XXX': 1}; obiclean_head=True; obiclean_cluster={'XXX': 'HELIUM_000100422_612GNAAXX:7:30:1800:7833#0/2_CONS_SUB_SUB'}; seq_length=100; obiclean_internalcount=0; obiclean_status={'XXX': 's'}; seq_rank=56; merged_sample={'15a_F730814': 1}; obiclean_samplecount=1; obiclean_headcount=0; obiclean_singletoncount=1;
66 ttagccctaaacacaagacattaatataacgagattaatcgacagagtactaccggctat
67 agcttaaaactcaaaggacttggcggtgctttataccctt