Mercurial > repos > iuc > onto_tk_get_descendent_terms
diff get_descendent_terms.xml @ 0:7f7a43c6a147 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
author | iuc |
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date | Fri, 10 Nov 2017 11:35:57 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/get_descendent_terms.xml Fri Nov 10 11:35:57 2017 -0500 @@ -0,0 +1,52 @@ +<tool id="onto_tk_get_descendent_terms" name="Get the descendent terms" version="@VERSION@.0"> + <description>of a given OBO term</description> + <macros> + <import>onto_macros.xml</import> + </macros> + <expand macro="requirements" /> + <command detect_errors="aggressive"> + get_descendent_terms.pl + -f '$input' + -t '$term_id' > '$output' + </command> + <inputs> + <expand macro="input_ontology" /> + <expand macro="term_id" /> + </inputs> + <outputs> + <data format="tabular" name="output" label="Descendent terms of ${on_string}"> + <actions> + <action name="column_names" type="metadata" default="term ID,term name" /> + </actions> + </data> + </outputs> + <tests> + <test> + <param name="input" value="pre_cco_core.obo"/> + <param name="term_id" value="CCO:P0000019"/> + <output name="output" file="descendents.tab"/> + </test> + </tests> + <help> + +.. class:: infomark + +Collects the descendent terms (list of IDs) from a given term (existing ID) in the given OBO ontology. + +**Example** + +If you ask for the descendents of the Gene Ontology term with ID **GO:000741** you will get:: + + GO:0048288 nuclear membrane fusion during karyogamy + GO:0000745 nuclear migration during conjugation without cellular fusion + GO:0000744 karyogamy during conjugation without cellular fusion + GO:0032871 regulation of karyogamy + GO:0007344 pronuclear fusion + GO:0000742 karyogamy during conjugation with cellular fusion + GO:0010197 polar nucleus fusion + GO:0000743 nuclear migration during conjugation with cellular fusion + + </help> + <expand macro="citations" /> +</tool> +