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author iuc
date Fri, 10 Nov 2017 11:34:52 -0500
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1 # README
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3 ONTO-Toolkit is a collection of Galaxy tools for managing ontologies
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4 that are represented in the OBO flat file format (spec 1.2 and 1.4).
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6 Those tools are basically wrappers around the most commonly used tools
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7 provided by the ONTO-PERL suite.
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9 See also:
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11 1. ONTO-PERL: An API supporting the development and analysis of bio-ontologies
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12 Antezana E, Egana M, De Baets B, Kuiper M, Mironov V.
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13 Bioinformatics 2008; doi: 10.1093/bioinformatics/btn042
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15 2. ONTO-Toolkit: A set of Galaxy tools to deal with OBO-formatted ontologies
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16 Antezana E, Venkatesan A, Mungall C, Mironov V, Kuiper M.
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17 BMC Bioinformatics 2010, 11(Suppl 12):S8 doi:10.1186/1471-2105-11-S12-S8
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19 3. OPPL-Galaxy: Enhancing ontology exploitation in Galaxy with OPPL.
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20 Egana M, Fernandez-Breis JT, Antezana E.
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21 Semantic Web Applications and Tools for Life Sciences (SWAT4LS), London, UK (2011)
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24 ## CITING ONTO-Toolkit
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26 If you use ONTO-Toolkit in your work, you are kindly requested to cite:
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28 ONTO-Toolkit: A set of Galaxy tools to deal with OBO-formatted ontologies
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29 Antezana E, Venkatesan A, Mungall C, Mironov V, Kuiper M.
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30 BMC Bioinformatics 2010, 11(Suppl 12):S8 doi:10.1186/1471-2105-11-S12-S8
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33 ## COPYRIGHT AND LICENCE
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35 Copyright (c) 2010-2014 Erick Antezana and Bjoern Gruening.
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36 OONTO-Toolkit is free software; you can redistribute it and/or
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37 modify it under the terms GPL3+, see the additional LICENSE file.
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41 ## INSTALLATION
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43 It is recommended to install this wrapper via the `Galaxy Tool Shed`.
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45 .. _`Galaxy Tool Shed`: http://toolshed.g2.bx.psu.edu/view/bgruening/onto_perl_toolkit
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48 ## History
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50 - v1.41.0: Initial release, forked from https://toolshed.g2.bx.psu.edu/view/erick-antezana/onto-toolkit
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51 with kind permission from Erick Antezana, who is the main developer of the underlying PERL library.
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