Mercurial > repos > iuc > onto_tk_get_term_synonyms
comparison get_term_synonyms.xml @ 0:3747710b8936 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
| author | iuc |
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| date | Fri, 10 Nov 2017 11:33:45 -0500 |
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| -1:000000000000 | 0:3747710b8936 |
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| 1 <tool id="onto_tk_get_term_synonyms" name="Get all term synonyms" version="@VERSION@.0"> | |
| 2 <description>of a given OBO term</description> | |
| 3 <macros> | |
| 4 <import>onto_macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements" /> | |
| 7 <command detect_errors="aggressive"> | |
| 8 get_terms_synonyms.pl | |
| 9 -f '$input' | |
| 10 -t '$term_id' | sort > '$output' | |
| 11 </command> | |
| 12 <inputs> | |
| 13 <expand macro="input_ontology" /> | |
| 14 <expand macro="term_id" /> | |
| 15 </inputs> | |
| 16 <outputs> | |
| 17 <data format="tabular" name="output" label="Term synonyms of ${on_string}"/> | |
| 18 </outputs> | |
| 19 <tests> | |
| 20 <test> | |
| 21 <param name="input" value="pre_cco_core.obo"/> | |
| 22 <param name="term_id" value="nucleous"/> | |
| 23 <output name="output" file="term_synonyms.tab"/> | |
| 24 </test> | |
| 25 </tests> | |
| 26 <help> | |
| 27 | |
| 28 .. class:: infomark | |
| 29 | |
| 30 Collects the terms and there corresponding synonyms (list of IDs) of the given OBO ontology. | |
| 31 | |
| 32 </help> | |
| 33 <expand macro="citations" /> | |
| 34 </tool> | |
| 35 |