comparison get_terms.xml @ 0:6c5e1431c7df draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
author iuc
date Fri, 10 Nov 2017 11:31:06 -0500
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:6c5e1431c7df
1 <tool id="onto_tk_get_terms" name="Get all terms" version="@VERSION@.0">
2 <description>of a given OBO term</description>
3 <macros>
4 <import>onto_macros.xml</import>
5 </macros>
6 <expand macro="requirements" />
7 <command detect_errors="aggressive">
8 get_terms.pl
9 -f '$input' > '$output'
10 </command>
11 <inputs>
12 <expand macro="input_ontology" />
13 </inputs>
14 <outputs>
15 <data format="tabular" name="output" label="All terms of ${on_string}">
16 <actions>
17 <action name="column_names" type="metadata" default="term ID,term name" />
18 </actions>
19 </data>
20 </outputs>
21 <tests>
22 <test>
23 <param name="input" value="pre_cco_core.obo"/>
24 <output name="output" file="terms.tab"/>
25 </test>
26 </tests>
27 <help>
28
29 .. class:: infomark
30
31 Collects the terms (list of IDs) of the given OBO ontology.
32
33 </help>
34 <expand macro="citations" />
35 </tool>
36