Mercurial > repos > iuc > onto_tk_get_terms
comparison get_terms.xml @ 0:6c5e1431c7df draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
| author | iuc |
|---|---|
| date | Fri, 10 Nov 2017 11:31:06 -0500 |
| parents | |
| children |
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| -1:000000000000 | 0:6c5e1431c7df |
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| 1 <tool id="onto_tk_get_terms" name="Get all terms" version="@VERSION@.0"> | |
| 2 <description>of a given OBO term</description> | |
| 3 <macros> | |
| 4 <import>onto_macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements" /> | |
| 7 <command detect_errors="aggressive"> | |
| 8 get_terms.pl | |
| 9 -f '$input' > '$output' | |
| 10 </command> | |
| 11 <inputs> | |
| 12 <expand macro="input_ontology" /> | |
| 13 </inputs> | |
| 14 <outputs> | |
| 15 <data format="tabular" name="output" label="All terms of ${on_string}"> | |
| 16 <actions> | |
| 17 <action name="column_names" type="metadata" default="term ID,term name" /> | |
| 18 </actions> | |
| 19 </data> | |
| 20 </outputs> | |
| 21 <tests> | |
| 22 <test> | |
| 23 <param name="input" value="pre_cco_core.obo"/> | |
| 24 <output name="output" file="terms.tab"/> | |
| 25 </test> | |
| 26 </tests> | |
| 27 <help> | |
| 28 | |
| 29 .. class:: infomark | |
| 30 | |
| 31 Collects the terms (list of IDs) of the given OBO ontology. | |
| 32 | |
| 33 </help> | |
| 34 <expand macro="citations" /> | |
| 35 </tool> | |
| 36 |