Mercurial > repos > iuc > onto_tk_get_terms
diff README.md @ 0:6c5e1431c7df draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
author | iuc |
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date | Fri, 10 Nov 2017 11:31:06 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.md Fri Nov 10 11:31:06 2017 -0500 @@ -0,0 +1,53 @@ +# README + +ONTO-Toolkit is a collection of Galaxy tools for managing ontologies +that are represented in the OBO flat file format (spec 1.2 and 1.4). + +Those tools are basically wrappers around the most commonly used tools +provided by the ONTO-PERL suite. + +See also: + + 1. ONTO-PERL: An API supporting the development and analysis of bio-ontologies + Antezana E, Egana M, De Baets B, Kuiper M, Mironov V. + Bioinformatics 2008; doi: 10.1093/bioinformatics/btn042 + + 2. ONTO-Toolkit: A set of Galaxy tools to deal with OBO-formatted ontologies + Antezana E, Venkatesan A, Mungall C, Mironov V, Kuiper M. + BMC Bioinformatics 2010, 11(Suppl 12):S8 doi:10.1186/1471-2105-11-S12-S8 + + 3. OPPL-Galaxy: Enhancing ontology exploitation in Galaxy with OPPL. + Egana M, Fernandez-Breis JT, Antezana E. + Semantic Web Applications and Tools for Life Sciences (SWAT4LS), London, UK (2011) + + +## CITING ONTO-Toolkit + +If you use ONTO-Toolkit in your work, you are kindly requested to cite: + + ONTO-Toolkit: A set of Galaxy tools to deal with OBO-formatted ontologies + Antezana E, Venkatesan A, Mungall C, Mironov V, Kuiper M. + BMC Bioinformatics 2010, 11(Suppl 12):S8 doi:10.1186/1471-2105-11-S12-S8 + + +## COPYRIGHT AND LICENCE + +Copyright (c) 2010-2014 Erick Antezana and Bjoern Gruening. +OONTO-Toolkit is free software; you can redistribute it and/or +modify it under the terms GPL3+, see the additional LICENSE file. + + + +## INSTALLATION + +It is recommended to install this wrapper via the `Galaxy Tool Shed`. + +.. _`Galaxy Tool Shed`: http://toolshed.g2.bx.psu.edu/view/bgruening/onto_perl_toolkit + + +## History + +- v1.41.0: Initial release, forked from https://toolshed.g2.bx.psu.edu/view/erick-antezana/onto-toolkit +with kind permission from Erick Antezana, who is the main developer of the underlying PERL library. + +