Mercurial > repos > iuc > onto_tk_get_terms
view get_terms.xml @ 0:6c5e1431c7df draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
author | iuc |
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date | Fri, 10 Nov 2017 11:31:06 -0500 |
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<tool id="onto_tk_get_terms" name="Get all terms" version="@VERSION@.0"> <description>of a given OBO term</description> <macros> <import>onto_macros.xml</import> </macros> <expand macro="requirements" /> <command detect_errors="aggressive"> get_terms.pl -f '$input' > '$output' </command> <inputs> <expand macro="input_ontology" /> </inputs> <outputs> <data format="tabular" name="output" label="All terms of ${on_string}"> <actions> <action name="column_names" type="metadata" default="term ID,term name" /> </actions> </data> </outputs> <tests> <test> <param name="input" value="pre_cco_core.obo"/> <output name="output" file="terms.tab"/> </test> </tests> <help> .. class:: infomark Collects the terms (list of IDs) of the given OBO ontology. </help> <expand macro="citations" /> </tool>