Mercurial > repos > iuc > orthofinder_onlygroups

comparison orthofinder_only_groups.xml @ 3:1aed170afb2b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit c39323361ef6ba2664646e4476736c80bcd01124"
author iuc
date Wed, 18 Dec 2019 15:24:46 -0500
parents 649b98adce77
children 999060f051ac
comparison
equal deleted inserted replaced
2:649b98adce77 3:1aed170afb2b
1 <tool name="OrthoFinder OnlyGroups" id="orthofinder_onlygroups" version="2.1.2"> 1 <tool name="OrthoFinder OnlyGroups" id="orthofinder_onlygroups" version="2.1.2">
2 <description>finds orthogroups in a set of proteomes</description> 2 <description>finds orthogroups in a set of proteomes</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="2.1.2">orthofinder</requirement> 4 <requirement type="package" version="2.1.2">orthofinder</requirement>
5 <requirement type="package" version="2.34">util-linux</requirement>
5 </requirements> 6 </requirements>
6 <command> 7 <command detect_errors="exit_code">
7 <![CDATA[ 8 <![CDATA[
8 ## prepare inputs 9 ## prepare inputs
9 #if $init.start == "fasta": 10 #if $init.start == "fasta":
10 #set $infiles = "" 11 #set $infiles = ""
11 #for $input in $init.input_fasta 12 #for $input in $init.input_fasta
398 ====================== 399 ======================
399 OrthoFinder OnlyGroups 400 OrthoFinder OnlyGroups
400 ====================== 401 ======================
401 402
402 Full readme at https://github.com/davidemms/OrthoFinder/blob/master/README.md 403 Full readme at https://github.com/davidemms/OrthoFinder/blob/master/README.md
403 Summary sketch at https://github.com/davidemms/OrthoFinder/blob/master/OrthoFinder-options.pdf 404 Summary sketch at https://github.com/davidemms/OrthoFinder/blob/master/OrthoFinder-manual.pdf
404 405
405 OrthoFinder is a fast, accurate and comprehensive analysis tool for comparative genomics. It finds orthologues and orthogroups infers gene trees for all orthogroups and infers a rooted species tree for the species being analysed. OrthoFinder also provides comprehensive statistics for comparative genomic analyses. OrthoFinder is simple to use and all you need to run it is a set of protein sequence files (one per species) in FASTA format (Emms, D.M. and Kelly, S., 2015). 406 OrthoFinder is a fast, accurate and comprehensive analysis tool for comparative genomics. It finds orthologues and orthogroups infers gene trees for all orthogroups and infers a rooted species tree for the species being analysed. OrthoFinder also provides comprehensive statistics for comparative genomic analyses. OrthoFinder is simple to use and all you need to run it is a set of protein sequence files (one per species) in FASTA format (Emms, D.M. and Kelly, S., 2015).
406 407
407 .. class:: infomark 408 .. class:: infomark
408 409