Mercurial > repos > iuc > orthofinder_onlygroups

comparison test-data/results_fromblast/Statistics_PerSpecies.tsv @ 5:974d8c28e586 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
author iuc
date Mon, 17 Aug 2020 12:59:19 -0400
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4:999060f051ac 5:974d8c28e586
1 Mycoplasma_agalactiae Mycoplasma_gallisepticum Mycoplasma_genitalium Mycoplasma_hyopneumoniae
2 Number of genes 820 763 476 674
3 Number of genes in orthogroups 659 619 436 562
4 Number of unassigned genes 161 144 40 112
5 Percentage of genes in orthogroups 80.4 81.1 91.6 83.4
6 Percentage of unassigned genes 19.6 18.9 8.4 16.6
7 Number of orthogroups containing species 466 470 394 449
8 Percentage of orthogroups containing species 74.9 75.6 63.3 72.2
9 Number of species-specific orthogroups 42 15 4 35
10 Number of genes in species-specific orthogroups 189 116 9 112
11 Percentage of genes in species-specific orthogroups 23.0 15.2 1.9 16.6
12
13
14 Number of genes per-species in orthogroup Number of orthogroups Number of orthogroups Number of orthogroups Number of orthogroups
15 '0 156 152 228 173
16 '1 392 423 367 398
17 '2 35 34 20 27
18 '3 25 4 5 10
19 '4 5 2 1 6
20 '5 3 0 0 2
21 '6 2 1 0 2
22 '7 0 2 0 2
23 '8 0 1 0 1
24 '9 0 1 0 0
25 '10 1 0 1 0
26 11-15 2 1 0 1
27 16-20 0 0 0 0
28 21-50 1 0 0 0
29 51-100 0 1 0 0
30 101-150 0 0 0 0
31 151-200 0 0 0 0
32 201-500 0 0 0 0
33 501-1000 0 0 0 0
34 '1001+ 0 0 0 0
35
36 Number of genes per-species in orthogroup Percentage of orthogroups Percentage of orthogroups Percentage of orthogroups Percentage of orthogroups
37 '0 25.1 24.4 36.7 27.8
38 '1 63.0 68.0 59.0 64.0
39 '2 5.6 5.5 3.2 4.3
40 '3 4.0 0.6 0.8 1.6
41 '4 0.8 0.3 0.2 1.0
42 '5 0.5 0.0 0.0 0.3
43 '6 0.3 0.2 0.0 0.3
44 '7 0.0 0.3 0.0 0.3
45 '8 0.0 0.2 0.0 0.2
46 '9 0.0 0.2 0.0 0.0
47 '10 0.2 0.0 0.2 0.0
48 11-15 0.3 0.2 0.0 0.2
49 16-20 0.0 0.0 0.0 0.0
50 21-50 0.2 0.0 0.0 0.0
51 51-100 0.0 0.2 0.0 0.0
52 101-150 0.0 0.0 0.0 0.0
53 151-200 0.0 0.0 0.0 0.0
54 201-500 0.0 0.0 0.0 0.0
55 501-1000 0.0 0.0 0.0 0.0
56 '1001+ 0.0 0.0 0.0 0.0
57
58 Number of genes per-species in orthogroup Number of genes Number of genes Number of genes Number of genes
59 '0 0 0 0 0
60 '1 392 423 367 398
61 '2 70 68 40 54
62 '3 75 12 15 30
63 '4 20 8 4 24
64 '5 15 0 0 10
65 '6 12 6 0 12
66 '7 0 14 0 14
67 '8 0 8 0 8
68 '9 0 9 0 0
69 '10 10 0 10 0
70 11-15 26 13 0 12
71 16-20 0 0 0 0
72 21-50 39 0 0 0
73 51-100 0 58 0 0
74 101-150 0 0 0 0
75 151-200 0 0 0 0
76 201-500 0 0 0 0
77 501-1000 0 0 0 0
78 '1001+ 0 0 0 0
79
80 Number of genes per-species in orthogroup Percentage of genes Percentage of genes Percentage of genes Percentage of genes
81 '0 0.0 0.0 0.0 0.0
82 '1 47.8 55.4 77.1 59.1
83 '2 8.5 8.9 8.4 8.0
84 '3 9.1 1.6 3.2 4.5
85 '4 2.4 1.0 0.8 3.6
86 '5 1.8 0.0 0.0 1.5
87 '6 1.5 0.8 0.0 1.8
88 '7 0.0 1.8 0.0 2.1
89 '8 0.0 1.0 0.0 1.2
90 '9 0.0 1.2 0.0 0.0
91 '10 1.2 0.0 2.1 0.0
92 11-15 3.2 1.7 0.0 1.8
93 16-20 0.0 0.0 0.0 0.0
94 21-50 4.8 0.0 0.0 0.0
95 51-100 0.0 7.6 0.0 0.0
96 101-150 0.0 0.0 0.0 0.0
97 151-200 0.0 0.0 0.0 0.0
98 201-500 0.0 0.0 0.0 0.0
99 501-1000 0.0 0.0 0.0 0.0
100 '1001+ 0.0 0.0 0.0 0.0