Mercurial > repos > iuc > orthofinder_onlygroups
comparison test-data/results/Statistics_Overall.csv @ 0:bfb20dbe1309 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
| author | iuc |
|---|---|
| date | Tue, 24 Oct 2017 06:40:40 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:bfb20dbe1309 |
|---|---|
| 1 Number of genes 2733 | |
| 2 Number of genes in orthogroups 1938 | |
| 3 Number of unassigned genes 795 | |
| 4 Percentage of genes in orthogroups 70.9 | |
| 5 Percentage of unassigned genes 29.1 | |
| 6 Number of orthogroups 536 | |
| 7 Number of species-specific orthogroups 6 | |
| 8 Number of genes in species-specific orthogroups 97 | |
| 9 Percentage of genes in species-specific orthogroups 3.5 | |
| 10 Mean orthogroup size 3.6 | |
| 11 Median orthogroup size 4.0 | |
| 12 G50 (assigned genes) 4 | |
| 13 G50 (all genes) 4 | |
| 14 O50 (assigned genes) 200 | |
| 15 O50 (all genes) 299 | |
| 16 Number of orthogroups with all species present 280 | |
| 17 Number of single-copy orthogroups 254 | |
| 18 Date 2017-06-06 | |
| 19 Orthogroups file Orthogroups.csv | |
| 20 Unassigned genes file Orthogroups_UnassignedGenes.csv | |
| 21 Per-species statistics Statistics_PerSpecies.csv | |
| 22 Overall statistics Statistics_Overall.csv | |
| 23 Orthogroups shared between species Orthogroups_SpeciesOverlaps.csv | |
| 24 | |
| 25 Average number of genes per-species in orthogroup Number of orthogroups Percentage of orthogroups Number of genes Percentage of genes | |
| 26 <1 222 41.4 510 26.3 | |
| 27 '1 304 56.7 1270 65.5 | |
| 28 '2 8 1.5 75 3.9 | |
| 29 '3 0 0.0 0 0.0 | |
| 30 '4 0 0.0 0 0.0 | |
| 31 '5 0 0.0 0 0.0 | |
| 32 '6 1 0.2 27 1.4 | |
| 33 '7 0 0.0 0 0.0 | |
| 34 '8 0 0.0 0 0.0 | |
| 35 '9 0 0.0 0 0.0 | |
| 36 '10 0 0.0 0 0.0 | |
| 37 11-15 1 0.2 56 2.9 | |
| 38 16-20 0 0.0 0 0.0 | |
| 39 21-50 0 0.0 0 0.0 | |
| 40 51-100 0 0.0 0 0.0 | |
| 41 101-150 0 0.0 0 0.0 | |
| 42 151-200 0 0.0 0 0.0 | |
| 43 201-500 0 0.0 0 0.0 | |
| 44 501-1000 0 0.0 0 0.0 | |
| 45 '1001+ 0 0.0 0 0.0 | |
| 46 | |
| 47 Number of species in orthogroup Number of orthogroups | |
| 48 1 6 | |
| 49 2 172 | |
| 50 3 78 | |
| 51 4 280 |