Mercurial > repos > iuc > orthofinder_onlygroups

comparison test-data/results/Statistics_PerSpecies.csv @ 0:bfb20dbe1309 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
author iuc
date Tue, 24 Oct 2017 06:40:40 -0400
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comparison
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-1:000000000000 0:bfb20dbe1309
1 Mycoplasma_agalactiae Mycoplasma_gallisepticum Mycoplasma_genitalium Mycoplasma_hyopneumoniae
2 Number of genes 820 763 476 674
3 Number of genes in orthogroups 503 561 429 445
4 Number of unassigned genes 317 202 47 229
5 Percentage of genes in orthogroups 61.3 73.5 90.1 66.0
6 Percentage of unassigned genes 38.7 26.5 9.9 34.0
7 Number of orthogroups containing species 432 462 394 416
8 Percentage of orthogroups containing species 80.6 86.2 73.5 77.6
9 Number of species-specific orthogroups 2 3 0 1
10 Number of genes in species-specific orthogroups 29 63 0 5
11 Percentage of genes in species-specific orthogroups 3.5 8.3 0.0 0.7
12
13
14 Number of genes per-species in orthogroup Number of orthogroups Number of orthogroups Number of orthogroups Number of orthogroups
15 '0 104 74 142 120
16 '1 400 429 368 403
17 '2 22 24 19 9
18 '3 6 6 5 1
19 '4 1 0 2 0
20 '5 2 2 0 1
21 '6 0 0 0 0
22 '7 0 0 0 0
23 '8 0 0 0 2
24 '9 0 0 0 0
25 '10 0 0 0 0
26 11-15 0 0 0 0
27 16-20 0 0 0 0
28 21-50 1 0 0 0
29 51-100 0 1 0 0
30 101-150 0 0 0 0
31 151-200 0 0 0 0
32 201-500 0 0 0 0
33 501-1000 0 0 0 0
34 '1001+ 0 0 0 0
35
36 Number of genes per-species in orthogroup Percentage of orthogroups Percentage of orthogroups Percentage of orthogroups Percentage of orthogroups
37 '0 19.4 13.8 26.5 22.4
38 '1 74.6 80.0 68.7 75.2
39 '2 4.1 4.5 3.5 1.7
40 '3 1.1 1.1 0.9 0.2
41 '4 0.2 0.0 0.4 0.0
42 '5 0.4 0.4 0.0 0.2
43 '6 0.0 0.0 0.0 0.0
44 '7 0.0 0.0 0.0 0.0
45 '8 0.0 0.0 0.0 0.4
46 '9 0.0 0.0 0.0 0.0
47 '10 0.0 0.0 0.0 0.0
48 11-15 0.0 0.0 0.0 0.0
49 16-20 0.0 0.0 0.0 0.0
50 21-50 0.2 0.0 0.0 0.0
51 51-100 0.0 0.2 0.0 0.0
52 101-150 0.0 0.0 0.0 0.0
53 151-200 0.0 0.0 0.0 0.0
54 201-500 0.0 0.0 0.0 0.0
55 501-1000 0.0 0.0 0.0 0.0
56 '1001+ 0.0 0.0 0.0 0.0
57
58 Number of genes per-species in orthogroup Number of genes Number of genes Number of genes Number of genes
59 '0 0 0 0 0
60 '1 400 429 368 403
61 '2 44 48 38 18
62 '3 18 18 15 3
63 '4 4 0 8 0
64 '5 10 10 0 5
65 '6 0 0 0 0
66 '7 0 0 0 0
67 '8 0 0 0 16
68 '9 0 0 0 0
69 '10 0 0 0 0
70 11-15 0 0 0 0
71 16-20 0 0 0 0
72 21-50 27 0 0 0
73 51-100 0 56 0 0
74 101-150 0 0 0 0
75 151-200 0 0 0 0
76 201-500 0 0 0 0
77 501-1000 0 0 0 0
78 '1001+ 0 0 0 0
79
80 Number of genes per-species in orthogroup Percentage of genes Percentage of genes Percentage of genes Percentage of genes
81 '0 0.0 0.0 0.0 0.0
82 '1 48.8 56.2 77.3 59.8
83 '2 5.4 6.3 8.0 2.7
84 '3 2.2 2.4 3.2 0.4
85 '4 0.5 0.0 1.7 0.0
86 '5 1.2 1.3 0.0 0.7
87 '6 0.0 0.0 0.0 0.0
88 '7 0.0 0.0 0.0 0.0
89 '8 0.0 0.0 0.0 2.4
90 '9 0.0 0.0 0.0 0.0
91 '10 0.0 0.0 0.0 0.0
92 11-15 0.0 0.0 0.0 0.0
93 16-20 0.0 0.0 0.0 0.0
94 21-50 3.3 0.0 0.0 0.0
95 51-100 0.0 7.3 0.0 0.0
96 101-150 0.0 0.0 0.0 0.0
97 151-200 0.0 0.0 0.0 0.0
98 201-500 0.0 0.0 0.0 0.0
99 501-1000 0.0 0.0 0.0 0.0
100 '1001+ 0.0 0.0 0.0 0.0