Mercurial > repos > iuc > orthofinder_onlygroups
diff test-data/results_fromblast/Statistics_PerSpecies.tsv @ 5:974d8c28e586 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
| author | iuc |
|---|---|
| date | Mon, 17 Aug 2020 12:59:19 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/results_fromblast/Statistics_PerSpecies.tsv Mon Aug 17 12:59:19 2020 -0400 @@ -0,0 +1,100 @@ + Mycoplasma_agalactiae Mycoplasma_gallisepticum Mycoplasma_genitalium Mycoplasma_hyopneumoniae +Number of genes 820 763 476 674 +Number of genes in orthogroups 659 619 436 562 +Number of unassigned genes 161 144 40 112 +Percentage of genes in orthogroups 80.4 81.1 91.6 83.4 +Percentage of unassigned genes 19.6 18.9 8.4 16.6 +Number of orthogroups containing species 466 470 394 449 +Percentage of orthogroups containing species 74.9 75.6 63.3 72.2 +Number of species-specific orthogroups 42 15 4 35 +Number of genes in species-specific orthogroups 189 116 9 112 +Percentage of genes in species-specific orthogroups 23.0 15.2 1.9 16.6 + + +Number of genes per-species in orthogroup Number of orthogroups Number of orthogroups Number of orthogroups Number of orthogroups +'0 156 152 228 173 +'1 392 423 367 398 +'2 35 34 20 27 +'3 25 4 5 10 +'4 5 2 1 6 +'5 3 0 0 2 +'6 2 1 0 2 +'7 0 2 0 2 +'8 0 1 0 1 +'9 0 1 0 0 +'10 1 0 1 0 +11-15 2 1 0 1 +16-20 0 0 0 0 +21-50 1 0 0 0 +51-100 0 1 0 0 +101-150 0 0 0 0 +151-200 0 0 0 0 +201-500 0 0 0 0 +501-1000 0 0 0 0 +'1001+ 0 0 0 0 + +Number of genes per-species in orthogroup Percentage of orthogroups Percentage of orthogroups Percentage of orthogroups Percentage of orthogroups +'0 25.1 24.4 36.7 27.8 +'1 63.0 68.0 59.0 64.0 +'2 5.6 5.5 3.2 4.3 +'3 4.0 0.6 0.8 1.6 +'4 0.8 0.3 0.2 1.0 +'5 0.5 0.0 0.0 0.3 +'6 0.3 0.2 0.0 0.3 +'7 0.0 0.3 0.0 0.3 +'8 0.0 0.2 0.0 0.2 +'9 0.0 0.2 0.0 0.0 +'10 0.2 0.0 0.2 0.0 +11-15 0.3 0.2 0.0 0.2 +16-20 0.0 0.0 0.0 0.0 +21-50 0.2 0.0 0.0 0.0 +51-100 0.0 0.2 0.0 0.0 +101-150 0.0 0.0 0.0 0.0 +151-200 0.0 0.0 0.0 0.0 +201-500 0.0 0.0 0.0 0.0 +501-1000 0.0 0.0 0.0 0.0 +'1001+ 0.0 0.0 0.0 0.0 + +Number of genes per-species in orthogroup Number of genes Number of genes Number of genes Number of genes +'0 0 0 0 0 +'1 392 423 367 398 +'2 70 68 40 54 +'3 75 12 15 30 +'4 20 8 4 24 +'5 15 0 0 10 +'6 12 6 0 12 +'7 0 14 0 14 +'8 0 8 0 8 +'9 0 9 0 0 +'10 10 0 10 0 +11-15 26 13 0 12 +16-20 0 0 0 0 +21-50 39 0 0 0 +51-100 0 58 0 0 +101-150 0 0 0 0 +151-200 0 0 0 0 +201-500 0 0 0 0 +501-1000 0 0 0 0 +'1001+ 0 0 0 0 + +Number of genes per-species in orthogroup Percentage of genes Percentage of genes Percentage of genes Percentage of genes +'0 0.0 0.0 0.0 0.0 +'1 47.8 55.4 77.1 59.1 +'2 8.5 8.9 8.4 8.0 +'3 9.1 1.6 3.2 4.5 +'4 2.4 1.0 0.8 3.6 +'5 1.8 0.0 0.0 1.5 +'6 1.5 0.8 0.0 1.8 +'7 0.0 1.8 0.0 2.1 +'8 0.0 1.0 0.0 1.2 +'9 0.0 1.2 0.0 0.0 +'10 1.2 0.0 2.1 0.0 +11-15 3.2 1.7 0.0 1.8 +16-20 0.0 0.0 0.0 0.0 +21-50 4.8 0.0 0.0 0.0 +51-100 0.0 7.6 0.0 0.0 +101-150 0.0 0.0 0.0 0.0 +151-200 0.0 0.0 0.0 0.0 +201-500 0.0 0.0 0.0 0.0 +501-1000 0.0 0.0 0.0 0.0 +'1001+ 0.0 0.0 0.0 0.0