diff test-data/results_fromblast/Statistics_Overall.csv @ 0:bfb20dbe1309 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
author iuc
date Tue, 24 Oct 2017 06:40:40 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/results_fromblast/Statistics_Overall.csv	Tue Oct 24 06:40:40 2017 -0400
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+Number of genes	2733
+Number of genes in orthogroups	1938
+Number of unassigned genes	795
+Percentage of genes in orthogroups	70.9
+Percentage of unassigned genes	29.1
+Number of orthogroups	536
+Number of species-specific orthogroups	6
+Number of genes in species-specific orthogroups	100
+Percentage of genes in species-specific orthogroups	3.7
+Mean orthogroup size	3.6
+Median orthogroup size	4.0
+G50 (assigned genes)	4
+G50 (all genes)	4
+O50 (assigned genes)	199
+O50 (all genes)	299
+Number of orthogroups with all species present	278
+Number of single-copy orthogroups	254
+Date	2017-06-08
+Orthogroups file	Orthogroups.csv
+Unassigned genes file	Orthogroups_UnassignedGenes.csv
+Per-species statistics	Statistics_PerSpecies.csv
+Overall statistics	Statistics_Overall.csv
+Orthogroups shared between species	Orthogroups_SpeciesOverlaps.csv
+
+Average number of genes per-species in orthogroup	Number of orthogroups	Percentage of orthogroups	Number of genes	Percentage of genes
+<1	224	41.8	516	26.6
+'1	302	56.3	1254	64.7
+'2	7	1.3	65	3.4
+'3	0	0.0	0	0.0
+'4	0	0.0	0	0.0
+'5	1	0.2	20	1.0
+'6	1	0.2	27	1.4
+'7	0	0.0	0	0.0
+'8	0	0.0	0	0.0
+'9	0	0.0	0	0.0
+'10	0	0.0	0	0.0
+11-15	1	0.2	56	2.9
+16-20	0	0.0	0	0.0
+21-50	0	0.0	0	0.0
+51-100	0	0.0	0	0.0
+101-150	0	0.0	0	0.0
+151-200	0	0.0	0	0.0
+201-500	0	0.0	0	0.0
+501-1000	0	0.0	0	0.0
+'1001+	0	0.0	0	0.0
+
+Number of species in orthogroup	Number of orthogroups
+1	6
+2	177
+3	75
+4	278