Mercurial > repos > iuc > orthofinder_onlygroups
diff test-data/results_fromblast/Statistics_Overall.csv @ 0:bfb20dbe1309 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
| author | iuc |
|---|---|
| date | Tue, 24 Oct 2017 06:40:40 -0400 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/results_fromblast/Statistics_Overall.csv Tue Oct 24 06:40:40 2017 -0400 @@ -0,0 +1,51 @@ +Number of genes 2733 +Number of genes in orthogroups 1938 +Number of unassigned genes 795 +Percentage of genes in orthogroups 70.9 +Percentage of unassigned genes 29.1 +Number of orthogroups 536 +Number of species-specific orthogroups 6 +Number of genes in species-specific orthogroups 100 +Percentage of genes in species-specific orthogroups 3.7 +Mean orthogroup size 3.6 +Median orthogroup size 4.0 +G50 (assigned genes) 4 +G50 (all genes) 4 +O50 (assigned genes) 199 +O50 (all genes) 299 +Number of orthogroups with all species present 278 +Number of single-copy orthogroups 254 +Date 2017-06-08 +Orthogroups file Orthogroups.csv +Unassigned genes file Orthogroups_UnassignedGenes.csv +Per-species statistics Statistics_PerSpecies.csv +Overall statistics Statistics_Overall.csv +Orthogroups shared between species Orthogroups_SpeciesOverlaps.csv + +Average number of genes per-species in orthogroup Number of orthogroups Percentage of orthogroups Number of genes Percentage of genes +<1 224 41.8 516 26.6 +'1 302 56.3 1254 64.7 +'2 7 1.3 65 3.4 +'3 0 0.0 0 0.0 +'4 0 0.0 0 0.0 +'5 1 0.2 20 1.0 +'6 1 0.2 27 1.4 +'7 0 0.0 0 0.0 +'8 0 0.0 0 0.0 +'9 0 0.0 0 0.0 +'10 0 0.0 0 0.0 +11-15 1 0.2 56 2.9 +16-20 0 0.0 0 0.0 +21-50 0 0.0 0 0.0 +51-100 0 0.0 0 0.0 +101-150 0 0.0 0 0.0 +151-200 0 0.0 0 0.0 +201-500 0 0.0 0 0.0 +501-1000 0 0.0 0 0.0 +'1001+ 0 0.0 0 0.0 + +Number of species in orthogroup Number of orthogroups +1 6 +2 177 +3 75 +4 278