Mercurial > repos > iuc > package_atlas_3_10

comparison tool_dependencies.xml @ 6:9b900e1578be draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_atlas_3_10 commit c2e47951d0f68e2533e45529ece8a52ab01b9cd2-dirty
author iuc
date Fri, 17 Jun 2016 06:07:19 -0400
parents c0a66ce2a119
children 98c017ec230d
comparison
equal deleted inserted replaced
5:c0a66ce2a119 6:9b900e1578be
46 <action type="shell_command">tar -jxvf atlas_3.10.2+gx0_src_all.tar.bz2</action> 46 <action type="shell_command">tar -jxvf atlas_3.10.2+gx0_src_all.tar.bz2</action>
47 <!-- a 64-bit architecture is assumed for compilation --> 47 <!-- a 64-bit architecture is assumed for compilation -->
48 <action type="shell_command"><![CDATA[ 48 <action type="shell_command"><![CDATA[
49 cd ATLAS && 49 cd ATLAS &&
50 mkdir build && 50 mkdir build &&
51 patch -p1 </host/static_full_blas_lapack.diff && 51 patch -p1 < ../atlas_patch-blas-lapack-1.0_src_all.diff &&
52 patch -p1 </host/shared_libraries.diff && 52 patch -p1 < ../atlas_patch-shared-lib-1.0_src_all.diff &&
53 patch -p1 </host/cpu-throttling-check.diff && 53 patch -p1 < ../atlas_patch-cpu-throttle-1.0_src_all.diff &&
54 cd build && 54 cd build &&
55 ../configure --prefix="$INSTALL_DIR" -D c -DWALL -b 64 -Fa alg '-fPIC' --with-netlib-lapack-tarfile=../../lapack-3.5.0.tgz -v 2 -t 0 -Si cputhrchk 0 && 55 ../configure --prefix="$INSTALL_DIR" -D c -DWALL -b 64 -Fa alg '-fPIC' --with-netlib-lapack-tarfile=../../lapack-3.5.0.tgz -v 2 -t 0 -Si cputhrchk 0 &&
56 make && 56 make &&
57 make install 57 make install
58 ]]></action> 58 ]]></action>