Mercurial > repos > iuc > package_atlas_3_10

comparison tool_dependencies.xml @ 7:98c017ec230d draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_atlas_3_10 commit 9d1bd84fdaa259740d8f75ede9ecfce9403b253a-dirty
author iuc
date Tue, 21 Jun 2016 15:28:12 -0400
parents 9b900e1578be
children
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6:9b900e1578be 7:98c017ec230d
50 mkdir build && 50 mkdir build &&
51 patch -p1 < ../atlas_patch-blas-lapack-1.0_src_all.diff && 51 patch -p1 < ../atlas_patch-blas-lapack-1.0_src_all.diff &&
52 patch -p1 < ../atlas_patch-shared-lib-1.0_src_all.diff && 52 patch -p1 < ../atlas_patch-shared-lib-1.0_src_all.diff &&
53 patch -p1 < ../atlas_patch-cpu-throttle-1.0_src_all.diff && 53 patch -p1 < ../atlas_patch-cpu-throttle-1.0_src_all.diff &&
54 cd build && 54 cd build &&
55 ../configure --prefix="$INSTALL_DIR" -D c -DWALL -b 64 -Fa alg '-fPIC' --with-netlib-lapack-tarfile=../../lapack-3.5.0.tgz -v 2 -t 0 -Si cputhrchk 0 && 55 ../configure --prefix="$INSTALL_DIR" -D c -DWALL -b 64 -Fa alg '-fPIC' --with-netlib-lapack-tarfile=../../lapack_3.5.0_src_all.tar.gz -v 2 -t 0 -Si cputhrchk 0 &&
56 make && 56 make &&
57 make install 57 make install
58 ]]></action> 58 ]]></action>
59 <action type="set_environment"> 59 <action type="set_environment">
60 <environment_variable action="set_to" name="ATLAS_LIB_DIR">$INSTALL_DIR/lib</environment_variable> 60 <environment_variable action="set_to" name="ATLAS_LIB_DIR">$INSTALL_DIR/lib</environment_variable>