Mercurial > repos > iuc > package_atlas_3_10
diff tool_dependencies.xml @ 4:f27d2f8761ae draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_atlas_3_10 commit 09872476567320942381c809c574e99d4b090bea-dirty
| author | iuc |
|---|---|
| date | Tue, 16 Feb 2016 16:57:05 -0500 |
| parents | 0538fd672119 |
| children | c0a66ce2a119 |
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--- a/tool_dependencies.xml Thu Jul 16 05:43:42 2015 -0400 +++ b/tool_dependencies.xml Tue Feb 16 16:57:05 2016 -0500 @@ -1,9 +1,12 @@ +<?xml version="1.0"?> <tool_dependency> <package name="atlas" version="3.10.2"> <install version="1.0"> <actions_group> <actions architecture="x86_64" os="linux"> - <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/atlas/atlas-3.10.2-Linux-x86_64.tar.gz</action> + <action type="download_by_url" sha256sum="c36a9edf352aa3652ae2c3cccf752351e12291c1d018da842093f9dc70fa2da3"> + https://depot.galaxyproject.org/software/atlas/atlas_3.10.2_linux_x64.tar.gz + </action> <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> @@ -13,6 +16,7 @@ <environment_variable action="set_to" name="ATLAS_INCLUDE_DIR">$INSTALL_DIR/include</environment_variable> <environment_variable action="set_to" name="ATLAS_BLAS_LIB_DIR">$INSTALL_DIR/lib/atlas</environment_variable> <environment_variable action="set_to" name="ATLAS_LAPACK_LIB_DIR">$INSTALL_DIR/lib/atlas</environment_variable> + <environment_variable action="set_to" name="ATLAS">$INSTALL_DIR</environment_variable> <environment_variable action="set_to" name="ATLAS_ROOT_PATH">$INSTALL_DIR</environment_variable> <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable> <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/atlas</environment_variable> @@ -36,12 +40,22 @@ <!-- NOOP: On OS X we will use Apple's vecLib --> </actions> <actions> - <action type="download_file">http://downloads.sourceforge.net/project/math-atlas/Stable/3.10.2/atlas3.10.2.tar.bz2</action> - <action type="download_file">http://www.netlib.org/lapack/lapack-3.5.0.tgz</action> - <action type="download_file">https://depot.galaxyproject.org/patch/atlas/static_full_blas_lapack.diff</action> - <action type="download_file">https://depot.galaxyproject.org/patch/atlas/shared_libraries.diff</action> - <action type="download_file">https://depot.galaxyproject.org/patch/atlas/cpu-throttling-check.diff</action> - <action type="shell_command">tar -jxvf atlas3.10.2.tar.bz2</action> + <action type="download_file" sha256sum="3aab139b118bf3fcdb4956fbd71676158d713ab0d3bccb2ae1dc3769db22102f"> + https://depot.galaxyproject.org/software/atlas/atlas_3.10.2+gx0_src_all.tar.bz2 + </action> + <action type="download_file" sha256sum="9ad8f0d3f3fb5521db49f2dd716463b8fb2b6bc9dc386a9956b8c6144f726352"> + https://depot.galaxyproject.org/software/lapack/lapack_3.5.0_src_all.tar.gz + </action> + <action type="download_file" sha256sum="adbe462b179a2d626cd229cddcb08e39ae2f2544eccf80ab617790b307667146"> + https://depot.galaxyproject.org/software/atlas/atlas_patch-blas-lapack-1.0_src_all.diff + </action> + <action type="download_file" sha256sum="95862478f7d276f948a58c583acd2935ada9ad3bb55944a303d94e161e202d89"> + https://depot.galaxyproject.org/software/atlas/atlas_patch-shared-lib-1.0_src_all.diff + </action> + <action type="download_file" sha256sum="f805600c46719f74752e9026e1461d084a385ba67838364a81c36cdfb69cad82"> + https://depot.galaxyproject.org/software/atlas/atlas_patch-cpu-throttle-1.0_src_all.diff + </action> + <action type="shell_command">tar -jxvf atlas_3.10.2+gx0_src_all.tar.bz2</action> <!-- a 64-bit architecture is assumed for compilation --> <action type="shell_command"><![CDATA[ cd ATLAS &&