Mercurial > repos > iuc > package_atlas_3_10

changeset 5:c0a66ce2a119 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_atlas_3_10 commit 4e829bc62e1328b12abf9d43112967296dcfed7a
author iuc
date Thu, 16 Jun 2016 12:14:27 -0400
parents f27d2f8761ae
children 9b900e1578be
files tool_dependencies.xml
diffstat 1 files changed, 7 insertions(+), 19 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Feb 16 16:57:05 2016 -0500
+++ b/tool_dependencies.xml	Thu Jun 16 12:14:27 2016 -0400
@@ -4,9 +4,7 @@
         <install version="1.0">
             <actions_group>
                 <actions architecture="x86_64" os="linux">
-                    <action type="download_by_url" sha256sum="c36a9edf352aa3652ae2c3cccf752351e12291c1d018da842093f9dc70fa2da3">
-                        https://depot.galaxyproject.org/software/atlas/atlas_3.10.2_linux_x64.tar.gz
-                    </action>
+                    <action type="download_by_url" sha256sum="c36a9edf352aa3652ae2c3cccf752351e12291c1d018da842093f9dc70fa2da3">https://depot.galaxyproject.org/software/atlas/atlas_3.10.2_linux_x64.tar.gz</action>
                     <action type="move_directory_files">
                         <source_directory>.</source_directory>
                         <destination_directory>$INSTALL_DIR</destination_directory>
@@ -40,26 +38,16 @@
                     <!-- NOOP: On OS X we will use Apple's vecLib -->
                 </actions>
                 <actions>
-                    <action type="download_file" sha256sum="3aab139b118bf3fcdb4956fbd71676158d713ab0d3bccb2ae1dc3769db22102f">
-                        https://depot.galaxyproject.org/software/atlas/atlas_3.10.2+gx0_src_all.tar.bz2
-                    </action>
-                    <action type="download_file" sha256sum="9ad8f0d3f3fb5521db49f2dd716463b8fb2b6bc9dc386a9956b8c6144f726352">
-                        https://depot.galaxyproject.org/software/lapack/lapack_3.5.0_src_all.tar.gz
-                    </action>
-                    <action type="download_file" sha256sum="adbe462b179a2d626cd229cddcb08e39ae2f2544eccf80ab617790b307667146">
-                        https://depot.galaxyproject.org/software/atlas/atlas_patch-blas-lapack-1.0_src_all.diff
-                    </action>
-                    <action type="download_file" sha256sum="95862478f7d276f948a58c583acd2935ada9ad3bb55944a303d94e161e202d89">
-                        https://depot.galaxyproject.org/software/atlas/atlas_patch-shared-lib-1.0_src_all.diff
-                    </action>
-                    <action type="download_file" sha256sum="f805600c46719f74752e9026e1461d084a385ba67838364a81c36cdfb69cad82">
-                        https://depot.galaxyproject.org/software/atlas/atlas_patch-cpu-throttle-1.0_src_all.diff
-                    </action>
+                    <action type="download_file" sha256sum="3aab139b118bf3fcdb4956fbd71676158d713ab0d3bccb2ae1dc3769db22102f">https://depot.galaxyproject.org/software/atlas/atlas_3.10.2+gx0_src_all.tar.bz2</action>
+                    <action type="download_file" sha256sum="9ad8f0d3f3fb5521db49f2dd716463b8fb2b6bc9dc386a9956b8c6144f726352">https://depot.galaxyproject.org/software/lapack/lapack_3.5.0_src_all.tar.gz</action>
+                    <action type="download_file" sha256sum="adbe462b179a2d626cd229cddcb08e39ae2f2544eccf80ab617790b307667146">https://depot.galaxyproject.org/software/atlas/atlas_patch-blas-lapack-1.0_src_all.diff</action>
+                    <action type="download_file" sha256sum="95862478f7d276f948a58c583acd2935ada9ad3bb55944a303d94e161e202d89">https://depot.galaxyproject.org/software/atlas/atlas_patch-shared-lib-1.0_src_all.diff</action>
+                    <action type="download_file" sha256sum="f805600c46719f74752e9026e1461d084a385ba67838364a81c36cdfb69cad82">https://depot.galaxyproject.org/software/atlas/atlas_patch-cpu-throttle-1.0_src_all.diff</action>
                     <action type="shell_command">tar -jxvf atlas_3.10.2+gx0_src_all.tar.bz2</action>
                     <!-- a 64-bit architecture is assumed for compilation -->
                     <action type="shell_command"><![CDATA[
                         cd ATLAS &&
-                        mkdir ATLAS/build &&
+                        mkdir build &&
                         patch -p1 </host/static_full_blas_lapack.diff &&
                         patch -p1 </host/shared_libraries.diff &&
                         patch -p1 </host/cpu-throttling-check.diff &&