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comparison tool_dependencies.xml @ 0:cc0bd4986b48 draft

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Imported from capsule None
author iuc
date Fri, 22 May 2015 04:54:43 -0400
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children 5f78108125fd
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-1:000000000000 0:cc0bd4986b48
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="augustus" version="3.1">
4 <install version="1.0">
5 <actions>
6 <action type="download_by_url">http://bioinf.uni-greifswald.de/augustus/binaries/augustus-3.1.tar.gz</action>
7 <action type="shell_command">make</action>
8 <action type="move_directory_files">
9 <source_directory>bin</source_directory>
10 <destination_directory>$INSTALL_DIR/bin</destination_directory>
11 </action>
12 <action type="move_directory_files">
13 <source_directory>scripts</source_directory>
14 <destination_directory>$INSTALL_DIR/scripts</destination_directory>
15 </action>
16 <action type="move_directory_files">
17 <source_directory>config</source_directory>
18 <destination_directory>$INSTALL_DIR/config</destination_directory>
19 </action>
20 <action type="set_environment">
21 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/scripts</environment_variable>
22 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
23 <environment_variable name="AUGUSTUS_CONFIG_PATH" action="set_to">$INSTALL_DIR/config</environment_variable>
24 </action>
25 </actions>
26 </install>
27 <readme>AUGUSTUS is a gene prediction program for eukaryotes written by Mario Stanke and Oliver Keller.
28 It can be used as an ab initio program, which means it bases its prediction purely on the
29 sequence. AUGUSTUS may also incorporate hints on the gene structure coming from extrinsic sources
30 such as EST, MS/MS, protein alignments and synthenic genomic alignments.
31 http://augustus.gobics.de/binaries/README.TXT</readme>
32 </package>
33 </tool_dependency>