Mercurial > repos > iuc > package_augustus_3_1

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit a07cb10e840db61500822627bf8c8addf29d9f4f
author iuc
date Tue, 20 Oct 2015 14:19:29 -0400
parents 71bb72c60987
children
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2:71bb72c60987 3:24009970003a
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="augustus" version="3.1"> 3 <package name="augustus" version="3.1">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action type="download_by_url">http://bioinf.uni-greifswald.de/augustus/binaries/augustus-3.1.tar.gz</action> 6 <action type="download_by_url">http://bioinf.uni-greifswald.de/augustus/binaries/old/augustus-3.1.tar.gz</action>
7 <action type="shell_command">make</action> 7 <action type="shell_command">make</action>
8 <action type="move_directory_files"> 8 <action type="move_directory_files">
9 <source_directory>bin</source_directory> 9 <source_directory>bin</source_directory>
10 <destination_directory>$INSTALL_DIR/bin</destination_directory> 10 <destination_directory>$INSTALL_DIR/bin</destination_directory>
11 </action> 11 </action>
18 <destination_directory>$INSTALL_DIR/config</destination_directory> 18 <destination_directory>$INSTALL_DIR/config</destination_directory>
19 </action> 19 </action>
20 <action type="set_environment"> 20 <action type="set_environment">
21 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/scripts</environment_variable> 21 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/scripts</environment_variable>
22 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> 22 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
23 <environment_variable name="AUGUSTUS_CONFIG_PATH" action="set_to">$INSTALL_DIR/config</environment_variable>
24 </action> 23 </action>
25 </actions> 24 </actions>
26 </install> 25 </install>
27 <readme>AUGUSTUS is a gene prediction program for eukaryotes written by Mario Stanke and Oliver Keller. 26 <readme>AUGUSTUS is a gene prediction program for eukaryotes written by Mario Stanke and Oliver Keller.
28 It can be used as an ab initio program, which means it bases its prediction purely on the 27 It can be used as an ab initio program, which means it bases its prediction purely on the