Mercurial > repos > iuc > package_bedtools_2_19

diff tool_dependencies.xml @ 0:fb3a854c7104 draft default tip

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Imported from capsule None
author iuc
date Mon, 25 Aug 2014 17:15:44 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Aug 25 17:15:44 2014 -0400
@@ -0,0 +1,22 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="bedtools" version="2.19.1">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://github.com/arq5x/bedtools2/releases/download/v2.19.1/bedtools-2.19.1.tar.gz</action>
+                <action type="shell_command">make</action>
+                <action type="move_directory_files">
+                    <source_directory>bin</source_directory>
+                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>BEDTools is a collection of utilities for comparing, summarizing, and intersecting genomic features in BED, GTF/GFF, VCF and BAM formats.</readme>
+    </package>
+</tool_dependency>
+
+
+