Mercurial > repos > iuc > package_bedtools_2_19

changeset 0:fb3a854c7104 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Imported from capsule None
author iuc
date Mon, 25 Aug 2014 17:15:44 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 22 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Aug 25 17:15:44 2014 -0400
@@ -0,0 +1,22 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="bedtools" version="2.19.1">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://github.com/arq5x/bedtools2/releases/download/v2.19.1/bedtools-2.19.1.tar.gz</action>
+                <action type="shell_command">make</action>
+                <action type="move_directory_files">
+                    <source_directory>bin</source_directory>
+                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>BEDTools is a collection of utilities for comparing, summarizing, and intersecting genomic features in BED, GTF/GFF, VCF and BAM formats.</readme>
+    </package>
+</tool_dependency>
+
+
+