# HG changeset patch # User iuc # Date 1377861970 14400 # Node ID 40c69b76b46e88f570941865510f961c1f8aedb1 Uploaded using shell script solution to downloading appropriate binaries. diff -r 000000000000 -r 40c69b76b46e tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri Aug 30 07:26:10 2013 -0400 @@ -0,0 +1,37 @@ + + + + + + + $INSTALL_DIR + + + + if [[ "$(uname)" == "Linux" ]]; then export FILENAME="ncbi-blast-2.2.26+-ia32-linux.tar.gz"; fi && + if [[ "$(arch)" == "x86_64" ]]; then export FILENAME="ncbi-blast-2.2.26+-x64-linux.tar.gz"; fi && + if [[ "$(uname)" == "Darwin" ]]; then export FILENAME="ncbi-blast-2.2.26+-universal-macosx.tar.gz"; fi && + echo Fetching $FILENAME && + if [[ "$(uname)" == "Linux" ]]; then wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/$FILENAME; fi && + if [[ "$(uname)" == "Darwin" ]]; then curl -O ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/$FILENAME; fi && + tar -zxvf $FILENAME && + echo Downloaded and decompressed + + + + ncbi-blast-2.2.26+/bin + $INSTALL_DIR + + + + +Downloads the precompiled 32bit Linux, 64bit Linux, or Mac OS X BLAST+ +binaries from the NCBI, which is faster than performing a local compliation, +avoids any issues with build dependencies, and is more reproducible between +installations as there is no variability from the compiler or library versions. + +For more details, see: +http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download + + +