Mercurial > repos > iuc > package_blast_plus_2_2_28
view tool_dependencies.xml @ 0:ed85ca8e4295 draft
Uploaded definition based on that for BLAST+ 2.2.26
author | iuc |
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date | Mon, 07 Oct 2013 09:38:50 -0400 |
parents | |
children | 23b9ba41ad00 |
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<?xml version="1.0"?> <tool_dependency> <package name="blast+" version="2.2.28"> <install version="1.0"> <actions> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> </action> <!-- arch under Linux 32bit includes some variants like i386 and i686, so use as default --> <action type="shell_command"> if [[ "$(uname)" == "Linux" ]]; then export FILENAME="ncbi-blast-2.2.28+-ia32-linux.tar.gz"; fi && if [[ "$(arch)" == "x86_64" ]]; then export FILENAME="ncbi-blast-2.2.28+-x64-linux.tar.gz"; fi && if [[ "$(uname)" == "Darwin" ]]; then export FILENAME="ncbi-blast-2.2.28+-universal-macosx.tar.gz"; fi && echo Fetching $FILENAME && if [[ "$(uname)" == "Linux" ]]; then wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.28/$FILENAME; fi && if [[ "$(uname)" == "Darwin" ]]; then curl -O ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.28/$FILENAME; fi && tar -zxvf $FILENAME && echo Downloaded and decompressed </action> <!-- move the binaries to the installation directory which is now on the $PATH --> <action type="move_directory_files"> <source_directory>ncbi-blast-2.2.28+/bin</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> </actions> </install> <readme> Downloads the precompiled 32bit Linux, 64bit Linux, or Mac OS X BLAST+ binaries from the NCBI, which is faster than performing a local compliation, avoids any issues with build dependencies, and is more reproducible between installations as there is no variability from the compiler or library versions. For more details, see: http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download </readme> </package> </tool_dependency>