Mercurial > repos > iuc > package_blast_plus_2_2_30
view tool_dependencies.xml @ 0:0fe5d5c28ea2 draft
Uploaded first version, based on BLAST+ 2.2.29 definition.
author | iuc |
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date | Thu, 30 Oct 2014 13:46:39 -0400 |
parents | |
children | 29b439c8abcb |
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<?xml version='1.0' encoding='utf-8'?> <tool_dependency> <package name="blast+" version="2.2.30"> <install version="1.0"> <actions_group> <!-- Download the binaries for BLAST+ compatible with 64-bit OSX. --> <actions os="darwin" architecture="x86_64"> <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-universal-macosx.tar.gz</action> <action type="move_directory_files"> <source_directory>bin</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> </actions> <!-- Download the binaries for BLAST+ compatible with 32-bit OSX. --> <actions os="darwin" architecture="i386"> <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-universal-macosx.tar.gz</action> <action type="move_directory_files"> <source_directory>bin</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> </actions> <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. --> <actions os="linux" architecture="x86_64"> <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-x64-linux.tar.gz</action> <action type="move_directory_files"> <source_directory>bin</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> </actions> <!-- Download the binaries for BLAST+ compatible with 32-bit Linux (i386). --> <actions os="linux" architecture="i386"> <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-ia32-linux.tar.gz</action> <action type="move_directory_files"> <source_directory>bin</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> </actions> <!-- Download the binaries for BLAST+ compatible with 32-bit Linux (i686). --> <actions os="linux" architecture="i686"> <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-ia32-linux.tar.gz</action> <action type="move_directory_files"> <source_directory>bin</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> </actions> <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> <actions> <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action> <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action> <action type="shell_command">uname</action> <action type="shell_command">arch</action> <action type="shell_command">echo "Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!"</action> <action type="shell_command">false</action> <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> </actions> <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> <environment_variable name="BLAST_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable> </action> </actions_group> </install> <readme> Downloads the precompiled 32bit Linux, 64bit Linux, or Mac OS X BLAST+ binaries from the NCBI, which is faster than performing a local compliation, avoids any issues with build dependencies, and is more reproducible between installations as there is no variability from the compiler or library versions. For more details, see: http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download </readme> </package> </tool_dependency>