Mercurial > repos > iuc > package_blast_plus_2_2_31

comparison tool_dependencies.xml @ 0:e36f75574aec draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/peterjc/galaxy_blast/packages/package_blast_plus_2_2_31 commit 37c9a84ce3065ceab57cfb4cdd35a4a75d6ef223
author peterjc
date Sat, 04 Jul 2015 09:17:56 -0400
parents
children 586f60b412fe
comparison
equal deleted inserted replaced
-1:000000000000 0:e36f75574aec
1 <?xml version='1.0' encoding='utf-8'?>
2 <tool_dependency>
3 <package name="blast+" version="2.2.31">
4 <install version="1.0">
5 <actions_group>
6 <!-- Download the binaries for BLAST+ compatible with 64-bit OSX. -->
7 <actions os="darwin" architecture="x86_64">
8 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.31/ncbi-blast-2.2.31+-universal-macosx.tar.gz</action>
9 <action type="move_directory_files">
10 <source_directory>bin</source_directory>
11 <destination_directory>$INSTALL_DIR</destination_directory>
12 </action>
13 </actions>
14 <!-- Download the binaries for BLAST+ compatible with 32-bit OSX. -->
15 <actions os="darwin" architecture="i386">
16 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.31/ncbi-blast-2.2.31+-universal-macosx.tar.gz</action>
17 <action type="move_directory_files">
18 <source_directory>bin</source_directory>
19 <destination_directory>$INSTALL_DIR</destination_directory>
20 </action>
21 </actions>
22 <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. -->
23 <actions os="linux" architecture="x86_64">
24 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.31/ncbi-blast-2.2.31+-x64-linux.tar.gz</action>
25 <action type="move_directory_files">
26 <source_directory>bin</source_directory>
27 <destination_directory>$INSTALL_DIR</destination_directory>
28 </action>
29 </actions>
30 <!-- Download the binaries for BLAST+ compatible with 32-bit Linux (i386). -->
31 <actions os="linux" architecture="i386">
32 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.31/ncbi-blast-2.2.31+-ia32-linux.tar.gz</action>
33 <action type="move_directory_files">
34 <source_directory>bin</source_directory>
35 <destination_directory>$INSTALL_DIR</destination_directory>
36 </action>
37 </actions>
38 <!-- Download the binaries for BLAST+ compatible with 32-bit Linux (i686). -->
39 <actions os="linux" architecture="i686">
40 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.31/ncbi-blast-2.2.31+-ia32-linux.tar.gz</action>
41 <action type="move_directory_files">
42 <source_directory>bin</source_directory>
43 <destination_directory>$INSTALL_DIR</destination_directory>
44 </action>
45 </actions>
46 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
47 <actions>
48 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action>
49 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
50 <action type="shell_command">uname</action>
51 <action type="shell_command">arch</action>
52 <action type="shell_command">echo "Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!"</action>
53 <action type="shell_command">false</action>
54 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
55 </actions>
56 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
57 <action type="set_environment">
58 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
59 <environment_variable name="BLAST_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable>
60 </action>
61 </actions_group>
62 </install>
63 <readme>
64 Downloads the precompiled 32bit Linux, 64bit Linux, or Mac OS X BLAST+
65 binaries from the NCBI, which is faster than performing a local compliation,
66 avoids any issues with build dependencies, and is more reproducible between
67 installations as there is no variability from the compiler or library versions.
68
69 For more details, see:
70 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download
71 </readme>
72 </package>
73 </tool_dependency>