Mercurial > repos > iuc > package_blast_plus_2_4_0
comparison tool_dependencies.xml @ 0:7d1b2564a344 draft default tip
Install recipe for NCBI BLAST+ 2.4.0
author | peterjc |
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date | Fri, 05 Aug 2016 09:35:12 -0400 |
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-1:000000000000 | 0:7d1b2564a344 |
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1 <?xml version='1.0' encoding='utf-8'?> | |
2 <tool_dependency> | |
3 <package name="blast+" version="2.4.0"> | |
4 <install version="1.0"> | |
5 <actions_group> | |
6 <!-- Download the binaries for BLAST+ compatible with 64-bit OSX. --> | |
7 <actions os="darwin" architecture="x86_64"> | |
8 <action type="download_by_url" sha256sum="0b248ba8b90d2e13ea5cb41066f71e08bd3e4a38eef0f14827a881aa82665f14">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.4.0/ncbi-blast-2.4.0+-universal-macosx.tar.gz</action> | |
9 <action type="move_directory_files"> | |
10 <source_directory>bin</source_directory> | |
11 <destination_directory>$INSTALL_DIR</destination_directory> | |
12 </action> | |
13 </actions> | |
14 <!-- Download the binaries for BLAST+ compatible with 32-bit OSX. --> | |
15 <actions os="darwin" architecture="i386"> | |
16 <action type="download_by_url" sha256sum="0b248ba8b90d2e13ea5cb41066f71e08bd3e4a38eef0f14827a881aa82665f14">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.4.0/ncbi-blast-2.4.0+-universal-macosx.tar.gz</action> | |
17 <action type="move_directory_files"> | |
18 <source_directory>bin</source_directory> | |
19 <destination_directory>$INSTALL_DIR</destination_directory> | |
20 </action> | |
21 </actions> | |
22 <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. --> | |
23 <actions os="linux" architecture="x86_64"> | |
24 <action type="download_by_url" sha256sum="21aa7ca60954ce9c6d3f572e427fee804291fcad41447d554033a81d5af96a2b">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.4.0/ncbi-blast-2.4.0+-x64-linux.tar.gz</action> | |
25 <action type="move_directory_files"> | |
26 <source_directory>bin</source_directory> | |
27 <destination_directory>$INSTALL_DIR</destination_directory> | |
28 </action> | |
29 </actions> | |
30 <actions> | |
31 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action> | |
32 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action> | |
33 <action type="shell_command">uname</action> | |
34 <action type="shell_command">arch</action> | |
35 <action type="shell_command">echo "Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!"</action> | |
36 <action type="shell_command">false</action> | |
37 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> | |
38 </actions> | |
39 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> | |
40 <action type="set_environment"> | |
41 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | |
42 <environment_variable name="BLAST_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable> | |
43 </action> | |
44 </actions_group> | |
45 </install> | |
46 <readme> | |
47 Downloads the precompiled 64 bit Linux, or Mac OS X BLAST+ binaries from the NCBI, | |
48 which is faster than performing a local compilation, avoids any issues with build | |
49 dependencies, and is more reproducible between installations as there is no | |
50 variability from the compiler or library versions. | |
51 | |
52 Note that NCBI do not provide 32 bit Linux binaries anymore. | |
53 | |
54 For more details, see: | |
55 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download | |
56 </readme> | |
57 </package> | |
58 </tool_dependency> |