Mercurial > repos > iuc > package_blast_plus_2_7_0
comparison tool_dependencies.xml @ 0:7a2e8d1a218b draft default tip
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| author | iuc |
|---|---|
| date | Thu, 12 Oct 2017 05:45:06 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:7a2e8d1a218b |
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| 1 <?xml version='1.0' encoding='utf-8'?> | |
| 2 <tool_dependency> | |
| 3 <package name="blast" version="2.7.0"> | |
| 4 <install version="1.0"> | |
| 5 <actions_group> | |
| 6 <!-- Download the binaries for BLAST+ compatible with 64-bit OSX. --> | |
| 7 <actions os="darwin" architecture="x86_64"> | |
| 8 <!-- Original URL https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.0/ncbi-blast-2.7.0+-x64-macosx.tar.gz --> | |
| 9 <action type="download_by_url" sha256sum="c295aa858638a8194d6b4abbefedaa2759e67ee2932e3553ffbc4afa138b20ee" target_filename="ncbi-blast-2.7.0+-x64-macosx.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.7.0_darwin_x64.tar.gz</action> | |
| 10 <action type="move_directory_files"> | |
| 11 <source_directory>bin</source_directory> | |
| 12 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 13 </action> | |
| 14 </actions> | |
| 15 <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. --> | |
| 16 <actions os="linux" architecture="x86_64"> | |
| 17 <!-- Original URL https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.0/ncbi-blast-2.7.0+-x64-linux.tar.gz --> | |
| 18 <action type="download_by_url" sha256sum="cf61c3a687dae6475e73b571bf06ff92cbbb74a2cdc557f1059d0f12485eb10e" target_filename="ncbi-blast-2.7.0+-x64-linux.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.7.0_linux_x64.tar.gz</action> | |
| 19 <action type="move_directory_files"> | |
| 20 <source_directory>bin</source_directory> | |
| 21 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 22 </action> | |
| 23 </actions> | |
| 24 <actions> | |
| 25 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not supported."</action> | |
| 26 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action> | |
| 27 <action type="shell_command">uname</action> | |
| 28 <action type="shell_command">arch</action> | |
| 29 <action type="shell_command">echo "Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!"</action> | |
| 30 <action type="shell_command">false</action> | |
| 31 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> | |
| 32 </actions> | |
| 33 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> | |
| 34 <action type="set_environment"> | |
| 35 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | |
| 36 <environment_variable name="BLAST_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable> | |
| 37 </action> | |
| 38 </actions_group> | |
| 39 </install> | |
| 40 <readme> | |
| 41 Downloads the precompiled 64 bit Linux, or Mac OS X BLAST+ binaries from the NCBI, | |
| 42 which is faster than performing a local compilation, avoids any issues with build | |
| 43 dependencies, and is more reproducible between installations as there is no | |
| 44 variability from the compiler or library versions. | |
| 45 | |
| 46 Note that NCBI do not provide any 32 bit binaries anymore. | |
| 47 | |
| 48 For more details, see: | |
| 49 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download | |
| 50 </readme> | |
| 51 </package> | |
| 52 </tool_dependency> |