# HG changeset patch
# User iuc
# Date 1422369881 18000
# Node ID 3c03e7c7f7bb47003e5134cae393e68417eebe4b

Imported from capsule None

diff -r 000000000000 -r 3c03e7c7f7bb tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Jan 27 09:44:41 2015 -0500
@@ -0,0 +1,35 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="bzlib" version="1.0.6">
+      <repository changeset_revision="f744bc704064" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="boost" version="1.55.0">
+      <install version="1.0">
+          <actions>
+              <action type="download_by_url">http://downloads.sourceforge.net/project/boost/boost/1.55.0/boost_1_55_0.tar.gz</action>
+                <!-- populate the environment variables from the dependend repos -->
+                <action type="set_environment_for_install">
+                  <repository changeset_revision="f744bc704064" name="package_bzlib_1_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                      <package name="bzlib" version="1.0.6" />
+                    </repository>
+                </action>
+                <action type="shell_command">./bootstrap.sh</action>
+                <!-- try to set the right architecture with uname -m -->
+                <action type="shell_command">
+                    ./bjam address-model=64 cflags=-fPIC cxxflags=-fPIC install --prefix=$INSTALL_DIR/boost/ -sBZIP2_INCLUDE=$BZLIB_INCLUDE_DIR -sBZIP2_LIB=$BZLIB_LIB_DIR -sBZIP2_SOURCE=$BZLIB_SOURCE_DIR; 
+                </action>
+                <action type="set_environment">
+                  <environment_variable action="set_to" name="BOOST_ROOT_DIR">$INSTALL_DIR/boost</environment_variable>
+                    <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/boost/lib/</environment_variable>
+                    <environment_variable action="prepend_to" name="CPLUS_INCLUDE_PATH">$INSTALL_DIR/boost/include</environment_variable>
+                    <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/boost/include</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        Compiling boost requires a C++ compiler (typically gcc). 
+        You can access the boost root directory through the $BOOST_ROOT_DIR system variable. All modules will be build.
+        Development of that wrapper happens in https://github.com/bgruening/galaxytools/.
+        </readme>
+    </package>
+</tool_dependency>