Mercurial > repos > iuc > package_bx_python_12_2013
annotate tool_dependencies.xml @ 3:f3da89b77a7c draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bx_python_12_2013 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
| author | iuc |
|---|---|
| date | Fri, 17 Jul 2015 10:13:57 -0400 |
| parents | 55bd96a1c3b3 |
| children |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 1 | 3 <package name="numpy" version="1.7.1"> |
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f3da89b77a7c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bx_python_12_2013 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
parents:
2
diff
changeset
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4 <repository changeset_revision="300877695495" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
| 1 | 5 </package> |
| 2 | 6 <package name="bx-python" version="12-2013"> |
| 0 | 7 <install version="1.0"> |
| 8 <actions> | |
| 2 | 9 <action type="shell_command">hg clone -r ac9fa7a479f269421edc1b0e4f1c2431981b0cf5 https://bitbucket.org/james_taylor/bx-python</action> |
| 1 | 10 |
| 11 <action type="set_environment_for_install"> | |
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3
f3da89b77a7c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bx_python_12_2013 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
parents:
2
diff
changeset
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12 <repository changeset_revision="300877695495" name="package_numpy_1_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> |
| 1 | 13 <package name="numpy" version="1.7.1" /> |
| 14 </repository> | |
| 15 </action> | |
| 16 | |
| 0 | 17 <action type="make_directory">$INSTALL_DIR/lib/python</action> |
| 18 <action type="shell_command"> | |
|
3
f3da89b77a7c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bx_python_12_2013 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
parents:
2
diff
changeset
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19 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && |
| 0 | 20 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action> |
| 21 <action type="set_environment"> | |
| 22 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> | |
| 23 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
| 24 <environment_variable action="set_to" name="BX_PYTHON_PATH">$INSTALL_DIR</environment_variable> | |
| 25 </action> | |
| 26 </actions> | |
| 27 </install> | |
| 28 <readme> | |
| 29 Installation of bx-python. The installation can be accessed via BX_PYTHON_PATH. | |
| 30 </readme> | |
| 31 </package> | |
| 32 </tool_dependency> |