Mercurial > repos > iuc > package_cummerbund_2_8_2

annotate tool_dependencies.xml @ 0:5aacc6d160ed draft

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Uploaded tool dependency definition.
author iuc
date Sun, 21 Dec 2014 16:43:39 -0500
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children 271dd1fcbb47
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5aacc6d160ed Uploaded tool dependency definition.
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="R" version="3.1.2">
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4 <repository changeset_revision="7cb487a32bde" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="cummeRbund" version="2.8.2">
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7 <install version="1.0">
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8 <actions>
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9 <action type="setup_r_environment">
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10 <repository changeset_revision="7cb487a32bde" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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11 <package name="R" version="3.1.2" />
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12 </repository>
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13 <package>http://cran.r-project.org/src/contrib/DBI_0.3.1.tar.gz</package>
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14 <package>http://cran.r-project.org/src/contrib/bitops_1.0-6.tar.gz</package>
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15 <package>http://cran.r-project.org/src/contrib/RCurl_1.95-4.5.tar.gz</package>
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16 <package>http://cran.r-project.org/src/contrib/XML_3.98-1.1.tar.gz</package>
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17 <package>http://cran.r-project.org/src/contrib/RSQLite_1.0.0.tar.gz</package>
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18 <package>http://cran.r-project.org/src/contrib/digest_0.6.7.tar.gz</package>
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19 <package>http://cran.r-project.org/src/contrib/Rcpp_0.11.3.tar.gz</package>
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20 <package>http://cran.r-project.org/src/contrib/plyr_1.8.1.tar.gz</package>
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21 <package>http://cran.r-project.org/src/contrib/gtable_0.1.2.tar.gz</package>
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22 <package>http://cran.r-project.org/src/contrib/proto_0.3-10.tar.gz</package>
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23 <package>http://cran.r-project.org/src/contrib/stringr_0.6.2.tar.gz</package>
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24 <package>http://cran.r-project.org/src/contrib/reshape2_1.4.1.tar.gz</package>
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25 <package>http://cran.r-project.org/src/contrib/RColorBrewer_1.1-2.tar.gz</package>
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26 <package>http://cran.r-project.org/src/contrib/dichromat_2.0-0.tar.gz</package>
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27 <package>http://cran.r-project.org/src/contrib/labeling_0.3.tar.gz</package>
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28 <package>http://cran.r-project.org/src/contrib/colorspace_1.2-4.tar.gz</package>
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29 <package>http://cran.r-project.org/src/contrib/munsell_0.4.2.tar.gz</package>
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30 <package>http://cran.r-project.org/src/contrib/scales_0.2.4.tar.gz</package>
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31 <package>http://cran.r-project.org/src/contrib/ggplot2_1.0.0.tar.gz</package>
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32 <package>http://cran.r-project.org/src/contrib/fastcluster_1.1.13.tar.gz</package>
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33 <package>http://cran.r-project.org/src/contrib/plyr_1.8.1.tar.gz</package>
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34 <package>http://cran.r-project.org/src/contrib/getopt_1.20.0.tar.gz</package>
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35 <package>http://cran.r-project.org/src/contrib/rjson_0.2.15.tar.gz</package>
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36 <package>http://cran.r-project.org/src/contrib/findpython_1.0.1.tar.gz</package>
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37 <package>http://cran.r-project.org/src/contrib/argparse_1.0.1.tar.gz</package>
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38 <package>http://cran.r-project.org/src/contrib/lattice_0.20-29.tar.gz</package>
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39 <package>http://cran.r-project.org/src/contrib/latticeExtra_0.6-26.tar.gz</package>
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40 <package>http://cran.r-project.org/src/contrib/checkmate_1.5.1.tar.gz</package>
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41 <package>http://cran.r-project.org/src/contrib/BBmisc_1.8.tar.gz</package>
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42 <package>http://cran.r-project.org/src/contrib/brew_1.0-6.tar.gz</package>
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43 <package>http://cran.r-project.org/src/contrib/fail_1.2.tar.gz</package>
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44 <package>http://cran.r-project.org/src/contrib/base64enc_0.1-2.tar.gz</package>
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45 <package>http://cran.r-project.org/src/contrib/sendmailR_1.2-1.tar.gz</package>
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46 <package>http://cran.r-project.org/src/contrib/BatchJobs_1.5.tar.gz</package>
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47 <package>http://cran.r-project.org/src/contrib/iterators_1.0.7.tar.gz</package>
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48 <package>http://cran.r-project.org/src/contrib/codetools_0.2-9.tar.gz</package>
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49 <package>http://cran.r-project.org/src/contrib/foreach_1.4.2.tar.gz</package>
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50 <package>http://cran.r-project.org/src/contrib/Formula_1.1-2.tar.gz</package>
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51 <package>http://cran.r-project.org/src/contrib/survival_2.37-7.tar.gz</package>
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52 <package>http://cran.r-project.org/src/contrib/acepack_1.3-3.3.tar.gz</package>
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53 <package>http://cran.r-project.org/src/contrib/Hmisc_3.14-6.tar.gz</package>
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54 <package>http://cran.r-project.org/src/contrib/R.methodsS3_1.6.1.tar.gz</package>
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55 <package>http://cran.r-project.org/src/contrib/matrixStats_0.12.2.tar.gz</package>
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56 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/BiocGenerics_0.12.1.tar.gz</package>
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57 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/S4Vectors_0.4.0.tar.gz</package>
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58 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/IRanges_2.0.1.tar.gz</package>
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59 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/GenomeInfoDb_1.2.4.tar.gz</package>
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60 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/XVector_0.6.0.tar.gz</package>
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61 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/GenomicRanges_1.18.3.tar.gz</package>
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62 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/zlibbioc_1.12.0.tar.gz</package>
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63 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/Biostrings_2.34.1.tar.gz</package>
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64 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/Rsamtools_1.18.2.tar.gz</package>
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65 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/BiocParallel_1.0.0.tar.gz</package>
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66 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/Biobase_2.26.0.tar.gz</package>
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67 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/AnnotationDbi_1.28.1.tar.gz</package>
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68 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/biomaRt_2.22.0.tar.gz</package>
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69 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/GenomicAlignments_1.2.1.tar.gz</package>
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70 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/rtracklayer_1.26.2.tar.gz</package>
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71 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/BSgenome_1.34.0.tar.gz</package>
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72 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/GenomicFeatures_1.18.3.tar.gz</package>
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73 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/VariantAnnotation_1.12.7.tar.gz</package>
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74 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/biovizBase_1.14.1.tar.gz</package>
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75 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/Gviz_1.10.3.tar.gz</package>
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76 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/cummeRbund_2.8.2.tar.gz</package>
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77 </action>
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78 </actions>
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79 </install>
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80 <readme>
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81 </readme>
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82 </package>
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83 </tool_dependency>