Mercurial > repos > iuc > package_cummerbund_2_8_2
diff tool_dependencies.xml @ 4:13c270433440 draft
Uploaded
| author | iuc |
|---|---|
| date | Thu, 04 Jun 2015 10:10:58 -0400 |
| parents | f18bcdb8c6c5 |
| children | 754912f24120 |
line wrap: on
line diff
--- a/tool_dependencies.xml Sun May 24 10:49:40 2015 -0400 +++ b/tool_dependencies.xml Thu Jun 04 10:10:58 2015 -0400 @@ -10,12 +10,12 @@ <install version="1.0"> <actions> <action type="setup_r_environment"> + <repository changeset_revision="8fe20c4f5aff" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="libcurl" version="7.35" /> + </repository> <repository changeset_revision="6e0eee4ea4e1" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="R" version="3.1.2" /> </repository> - <repository changeset_revision="8fe20c4f5aff" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> - <package name="libcurl" version="7.35" /> - </repository> <package>https://depot.galaxyproject.org/package/noarch/DBI_0.3.1.tar.gz</package> <package>https://depot.galaxyproject.org/package/noarch/bitops_1.0-6.tar.gz</package> <package>https://depot.galaxyproject.org/package/noarch/RCurl_1.95-4.5.tar.gz</package> @@ -60,21 +60,21 @@ <package>https://depot.galaxyproject.org/package/noarch/R.methodsS3_1.6.1.tar.gz</package> <package>https://depot.galaxyproject.org/package/noarch/matrixStats_0.12.2.tar.gz</package> <package>https://depot.galaxyproject.org/package/noarch/BiocGenerics_0.12.1.tar.gz</package> - <package>http://bioarchive.s3.amazonaws.com/S4Vectors_0.4.0.tar.gz</package> + <package>http://bioarchive.galaxyproject.org/S4Vectors_0.4.0.tar.gz</package> <package>https://depot.galaxyproject.org/package/noarch/IRanges_2.0.1.tar.gz</package> <package>https://depot.galaxyproject.org/package/noarch/GenomeInfoDb_1.2.4.tar.gz</package> - <package>http://bioarchive.s3.amazonaws.com/XVector_0.6.0.tar.gz</package> + <package>http://bioarchive.galaxyproject.org/XVector_0.6.0.tar.gz</package> <package>https://depot.galaxyproject.org/package/noarch/GenomicRanges_1.18.3.tar.gz</package> - <package>http://bioarchive.s3.amazonaws.com/zlibbioc_1.12.0.tar.gz</package> + <package>http://bioarchive.galaxyproject.org/zlibbioc_1.12.0.tar.gz</package> <package>https://depot.galaxyproject.org/package/noarch/Biostrings_2.34.1.tar.gz</package> <package>https://depot.galaxyproject.org/package/noarch/Rsamtools_1.18.2.tar.gz</package> - <package>http://bioarchive.s3.amazonaws.com/BiocParallel_1.0.0.tar.gz</package> - <package>http://bioarchive.s3.amazonaws.com/Biobase_2.26.0.tar.gz</package> + <package>http://bioarchive.galaxyproject.org/BiocParallel_1.0.0.tar.gz</package> + <package>http://bioarchive.galaxyproject.org/Biobase_2.26.0.tar.gz</package> <package>https://depot.galaxyproject.org/package/noarch/AnnotationDbi_1.28.1.tar.gz</package> - <package>http://bioarchive.s3.amazonaws.com/biomaRt_2.22.0.tar.gz</package> + <package>http://bioarchive.galaxyproject.org/biomaRt_2.22.0.tar.gz</package> <package>https://depot.galaxyproject.org/package/noarch/GenomicAlignments_1.2.1.tar.gz</package> <package>https://depot.galaxyproject.org/package/noarch/rtracklayer_1.26.2.tar.gz</package> - <package>https://depot.galaxyproject.org/package/noarch/BSgenome_1.34.1.tar.gz</package> + <package>https://bioarchive.galaxyproject.org/BSgenome_1.34.0.tar.gz</package> <package>https://depot.galaxyproject.org/package/noarch/GenomicFeatures_1.18.3.tar.gz</package> <package>https://depot.galaxyproject.org/package/noarch/VariantAnnotation_1.12.7.tar.gz</package> <package>https://depot.galaxyproject.org/package/noarch/biovizBase_1.14.1.tar.gz</package>