Mercurial > repos > iuc > package_cutadapt_1_8

annotate tool_dependencies.xml @ 0:980a47047f57 draft default tip

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Imported from capsule None
author iuc
date Wed, 15 Apr 2015 11:30:18 -0400
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="cython" version="0.20.1">
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4 <repository changeset_revision="c3a8c46fcb97" name="package_cython_0_20_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="cutadapt" version="1.8">
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url">https://pypi.python.org/packages/source/c/cutadapt/cutadapt-1.8.tar.gz</action>
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10 <action type="set_environment_for_install">
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11 <repository changeset_revision="c3a8c46fcb97" name="package_cython_0_20_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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12 <package name="cython" version="0.20.1" />
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13 </repository>
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14 </action>
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15 <action type="shell_command">
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16 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
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17 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
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18 </action>
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19 <action type="set_environment">
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20 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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21 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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22 <environment_variable action="set_to" name="CUTADAPT_ROOT_PATH">$INSTALL_DIR</environment_variable>
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23 </action>
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24 </actions>
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25 </install>
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26 <readme>
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27 </readme>
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28 </package>
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29 </tool_dependency>