Mercurial > repos > iuc > package_deseq2_1_8_2

annotate tool_dependencies.xml @ 1:623321e04b2d draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit f6ee6a549b9c121ee69914a2fdde392de74e4b19
author iuc
date Wed, 02 Dec 2015 16:18:13 -0500
parents 00b14423d00f
children
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00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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diff changeset
1 <?xml version="1.0"?>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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2 <tool_dependency>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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3 <package name="R" version="3.2.1">
1
623321e04b2d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit f6ee6a549b9c121ee69914a2fdde392de74e4b19
iuc
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4 <repository changeset_revision="fae49a02a848" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
0
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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5 </package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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6 <package name="libxml2" version="2.9.1">
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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7 <repository changeset_revision="e5475acebd6e" name="package_libxml2_2_9_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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8 </package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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9 <package name="deseq2" version="1.8.2">
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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10 <install version="1.0">
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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11 <actions>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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12 <action type="setup_r_environment">
1
623321e04b2d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit f6ee6a549b9c121ee69914a2fdde392de74e4b19
iuc
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13 <repository changeset_revision="fae49a02a848" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
0
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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14 <package name="R" version="3.2.1" />
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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15 </repository>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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16 <!-- libxml2 needs to be sourced after R because R also was compiled against a different version of libxml2 -->
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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17 <repository changeset_revision="e5475acebd6e" name="package_libxml2_2_9_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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18 <package name="libxml2" version="2.9.1" />
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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19 </repository>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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20 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/BiocGenerics_0.14.0.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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21 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/S4Vectors_0.6.5.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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22 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/IRanges_2.2.7.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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23 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/GenomeInfoDb_1.4.2.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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24 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/XVector_0.8.0.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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25 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/GenomicRanges_1.20.6.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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26 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/Rcpp_0.12.0.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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27 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/RcppArmadillo_0.5.500.2.0.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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28 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/Biobase_2.28.0.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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29 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/lambda.r_1.1.7.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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30 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/futile.options_1.0.0.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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31 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/futile.logger_1.4.1.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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32 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/snow_0.3-13.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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33 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/BiocParallel_1.2.20.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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34 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/DBI_0.3.1.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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35 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/RSQLite_1.0.0.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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36 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/AnnotationDbi_1.30.1.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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37 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/XML_3.98-1.3.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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38 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/xtable_1.7-4.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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39 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/annotate_1.46.1.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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40 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/survival_2.38-3.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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41 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/genefilter_1.50.0.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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42 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/lattice_0.20-33.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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43 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/locfit_1.5-9.1.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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44 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/RColorBrewer_1.1-2.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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45 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/geneplotter_1.46.0.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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46 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/plyr_1.8.3.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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47 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/digest_0.6.8.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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48 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/gtable_0.1.2.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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49 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/stringi_0.5-5.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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50 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/magrittr_1.5.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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51 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/stringr_1.0.0.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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52 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/reshape2_1.4.1.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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53 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/dichromat_2.0-0.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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54 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/colorspace_1.2-6.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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55 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/munsell_0.4.2.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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56 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/labeling_0.3.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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57 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/scales_0.3.0.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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58 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/proto_0.3-10.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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59 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/MASS_7.3-44.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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60 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/ggplot2_1.0.1.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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61 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/Formula_1.2-1.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
parents:
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62 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/latticeExtra_0.6-26.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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63 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/cluster_2.0.3.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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64 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/rpart_4.1-10.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
iuc
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65 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/nnet_7.3-11.tar.gz</package>
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66 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/acepack_1.3-3.3.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
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67 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/foreign_0.8-66.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
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68 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/gridExtra_2.0.0.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
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69 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/Hmisc_3.16-0.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
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70 <package>https://github.com/bgruening/download_store/raw/master/DESeq2_1_8_2/DESeq2_1.8.2.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
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71 <!-- gplots dependency -->
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72 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/gtools_3.4.1.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
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73 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/gdata_2.13.3.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
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74 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/bitops_1.0-6.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
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75 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/caTools_1.17.1.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
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76 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/KernSmooth_2.23-13.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
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77 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/gplots_2.14.2.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
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78
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
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79 <!-- wrapper dependency -->
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80 <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_2_10/getopt_1.20.0.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
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81 <package sha256sum="93d417f4eddb6fb7d679fbabb934b155de3965cf3d3e5ab03af69af5a0123357">https://github.com/bgruening/download_store/raw/master/DESeq2_1_8_2/rjson_0.2.14.tar.gz</package>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
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82 </action>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
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83 <action type="set_environment">
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84 <environment_variable action="set_to" name="DESEQ2_ROOT_PATH">$INSTALL_DIR</environment_variable>
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85 </action>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
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86 </actions>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
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87 </install>
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88 <readme>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
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89 Differential gene expression analysis based on the negative binomial distribution.
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90 http://www.bioconductor.org/packages/release/bioc/html/DESeq2.html
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
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91 </readme>
00b14423d00f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_8_2 commit c196ca939107154dbcfa84ed34fb01655f4fc59f
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92 </package>
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93 </tool_dependency>