Mercurial > repos > iuc > package_dexseq_1_14

comparison tool_dependencies.xml @ 0:8db27dbccbec draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit 876fc32b23d3b9c378ddbfbbba27d37d22576c85
author iuc
date Thu, 08 Oct 2015 16:51:06 -0400
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-1:000000000000 0:8db27dbccbec
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="R" version="3.2.1">
4 <repository changeset_revision="e46a7803f17b" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="cairo" version="1.14.2">
7 <repository changeset_revision="59eb331c1118" name="package_cairo_1_14_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="tiff" version="4.0.3">
10 <repository changeset_revision="1720cc7e1949" name="package_tiff_4_0_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
11 </package>
12 <package name="freetype" version="2.5.2">
13 <repository changeset_revision="289d7796a1f1" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
14 </package>
15 <package name="pixman" version="0.32.6">
16 <repository changeset_revision="b67e27ea8bd3" name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
17 </package>
18 <package name="libpng" version="1.6.7">
19 <repository changeset_revision="05df724aefbb" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
20 </package>
21 <package name="libxml2" version="2.9.1">
22 <repository changeset_revision="e5475acebd6e" name="package_libxml2_2_9_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
23 </package>
24 <package name="libcurl" version="7.35">
25 <repository changeset_revision="0d934b13250c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
26 </package>
27 <package name="dexseq" version="1.14">
28 <install version="1.0">
29 <actions>
30 <action type="setup_r_environment">
31 <repository changeset_revision="e46a7803f17b" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
32 <package name="R" version="3.2.1" />
33 </repository>
34 <repository changeset_revision="1720cc7e1949" name="package_tiff_4_0_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
35 <package name="tiff" version="4.0.3" />
36 </repository>
37 <repository changeset_revision="59eb331c1118" name="package_cairo_1_14_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
38 <package name="cairo" version="1.14.2" />
39 </repository>
40 <repository changeset_revision="289d7796a1f1" name="package_freetype_2_5_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
41 <package name="freetype" version="2.5.2" />
42 </repository>
43 <repository changeset_revision="b67e27ea8bd3" name="package_pixman_0_32_6" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
44 <package name="pixman" version="0.32.6" />
45 </repository>
46 <repository changeset_revision="05df724aefbb" name="package_libpng_1_6_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
47 <package name="libpng" version="1.6.7" />
48 </repository>
49 <repository changeset_revision="0d934b13250c" name="package_libcurl_7_35" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
50 <package name="libcurl" version="7.35" />
51 </repository>
52 <!-- libxml2 needs to be sourced after R because R also was compiled against a different version of libxml2 -->
53 <repository changeset_revision="e5475acebd6e" name="package_libxml2_2_9_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
54 <package name="libxml2" version="2.9.1" />
55 </repository>
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57 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/rjson_0.2.15.tar.gz</package>
58 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/getopt_1.20.0.tar.gz</package>
59 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/lambda.r_1.1.7.tar.gz</package>
60 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/futile.options_1.0.0.tar.gz</package>
61 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/futile.logger_1.4.1.tar.gz</package>
62 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/snow_0.3-13.tar.gz</package>
63 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/BiocParallel_1.2.20.tar.gz</package>
64 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/BiocGenerics_0.14.0.tar.gz</package>
65 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Biobase_2.28.0.tar.gz</package>
66 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/S4Vectors_0.6.4.tar.gz</package>
67 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/IRanges_2.2.7.tar.gz</package>
68 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/GenomeInfoDb_1.4.2.tar.gz</package>
69 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/XVector_0.8.0.tar.gz</package>
70 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/GenomicRanges_1.20.5.tar.gz</package>
71 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Rcpp_0.12.0.tar.gz</package>
72 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/RcppArmadillo_0.5.400.2.0.tar.gz</package>
73 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/DBI_0.3.1.tar.gz</package>
74 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/RSQLite_1.0.0.tar.gz</package>
75 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/AnnotationDbi_1.30.1.tar.gz</package>
76 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/XML_3.98-1.3.tar.gz</package>
77 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/xtable_1.7-4.tar.gz</package>
78 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/annotate_1.46.1.tar.gz</package>
79 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/survival_2.38-3.tar.gz</package>
80 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/genefilter_1.50.0.tar.gz</package>
81 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/lattice_0.20-33.tar.gz</package>
82 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/locfit_1.5-9.1.tar.gz</package>
83 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/RColorBrewer_1.1-2.tar.gz</package>
84 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/geneplotter_1.46.0.tar.gz</package>
85 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/plyr_1.8.3.tar.gz</package>
86 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/digest_0.6.8.tar.gz</package>
87 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/gtable_0.1.2.tar.gz</package>
88 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/stringi_0.5-5.tar.gz</package>
89 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/magrittr_1.5.tar.gz</package>
90 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/stringr_1.0.0.tar.gz</package>
91 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/reshape2_1.4.1.tar.gz</package>
92 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/dichromat_2.0-0.tar.gz</package>
93 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/colorspace_1.2-6.tar.gz</package>
94 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/munsell_0.4.2.tar.gz</package>
95 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/labeling_0.3.tar.gz</package>
96 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/scales_0.3.0.tar.gz</package>
97 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/proto_0.3-10.tar.gz</package>
98 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/MASS_7.3-44.tar.gz</package>
99 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/ggplot2_1.0.1.tar.gz</package>
100 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Formula_1.2-1.tar.gz</package>
101 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/latticeExtra_0.6-26.tar.gz</package>
102 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/cluster_2.0.3.tar.gz</package>
103 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/rpart_4.1-10.tar.gz</package>
104 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/nnet_7.3-11.tar.gz</package>
105 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/acepack_1.3-3.3.tar.gz</package>
106 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/foreign_0.8-66.tar.gz</package>
107 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/gridExtra_2.0.0.tar.gz</package>
108 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Hmisc_3.16-0.tar.gz</package>
109 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/DESeq2_1.8.1.tar.gz</package>
110 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/bitops_1.0-6.tar.gz</package>
111 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/RCurl_1.95-4.7.tar.gz</package>
112 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/biomaRt_2.24.0.tar.gz</package>
113 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/hwriter_1.3.2.tar.gz</package>
114 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/zlibbioc_1.14.0.tar.gz</package>
115 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Biostrings_2.36.4.tar.gz</package>
116 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Rsamtools_1.20.4.tar.gz</package>
117 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/statmod_1.4.21.tar.gz</package>
118 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/DEXSeq_1.14.2.tar.gz</package>
119 </action>
120 <action type="set_environment">
121 <environment_variable action="set_to" name="DEXSEQ_ROOT">$INSTALL_DIR/DEXSeq/</environment_variable>
122 </action>
123 </actions>
124 </install>
125 <readme>
126 DEXSeq in version
127 </readme>
128 </package>
129 </tool_dependency>